FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0200400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0185) R2 : 0.000345
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0155 (0.039) R2dN8 : 0.000446 R2N8 : 0.000345
σ : 0.348
deviance : 55.73
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.68 0.334 3.32 0.0846 0.243 -0.279 -0.271 -0.948 -0.0374 7.57 49.78 4878 -- --
51.79 0.335 3.32 -0.000486 0.231 -0.322 -0.377 -- -0.061 7.29 30.69 4632 -- --
50.85 0.332 3.32 0.096 0.247 -0.29 -- -1.04 -0.0392 7.83 55.17 5018 -- --
52.19 0.336 3.33 -0.00634 0.247 -0.268 -- -- -0.0808 7.59 66.99 4881 -- --
53.57 0.341 3.32 0.0833 -- -0.261 -- -0.977 -0.0257 -- 54.91 4453 -- --
52.99 0.341 3.3 -0.0108 0.208 -- -0.385 -- 0.00976 7.55 -- -- -- --
53.4 0.342 3.3 -0.0195 0.208 -- -- -- 0.0107 7.78 -- -- -- --
54.66 0.344 3.32 0.000826 -- -0.297 -- -- -0.0509 -- 53.71 4345 -- --
52.16 0.336 3.33 -- 0.249 -0.289 -- -- -0.1 7.52 68 4871 -- --
55.73 0.349 3.31 -0.0169 -- -- -- -- 0.0136 -- -- -- -- --
53.41 0.342 3.3 -- 0.207 -- -- -- 0.0128 7.79 -- -- -- --
54.63 0.344 3.32 -- -- -0.292 -- -- -0.049 -- 37.14 4325 -- --
55.73 0.348 3.31 -- -- -- -- -- 0.0155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 47.37 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 47.66 atmosphere 1005.0 90 > th dose dependent rect. 2 1
4 47.84 atmosphere 1005.0 10 > th dose dependent rect. 2 2
6 47.92 radiation 1.0 43200 < th dose dependent rect. 3 1
9 48.19 temperature 25.0 90 > th dose independent rect. 1 1
10 48.23 radiation 10.0 30 > th dose independent rect. 7 1
12 48.32 temperature 25.0 90 > th dose dependent rect. 1 2
14 48.38 radiation 1.0 4320 < th dose dependent rect. 3 1
16 48.41 humidity 80.0 10 < th dose independent rect. 24 8
20 48.42 humidity 80.0 10 < th dose independent rect. 6 2
28 48.44 wind 1.0 30 < th dose dependent rect. 2 1
31 48.45 wind 9.0 1440 < th dose independent rect. 3 1
32 48.45 temperature 10.0 1440 > th dose independent rect. 3 1
35 48.45 temperature 30.0 1440 < th dose independent rect. 3 1
39 48.45 humidity 50.0 1440 > th dose independent rect. 3 1
48 48.45 atmosphere 995.0 1440 > th dose independent rect. 3 1
49 48.45 radiation 1.0 1440 < th dose independent rect. 3 1
70 48.45 temperature 10.0 1440 > th dose independent rect. 4 23
86 48.46 wind 3.0 30 < th dose independent rect. 2 1
91 48.47 humidity 90.0 30 > th dose independent rect. 2 1
96 48.47 atmosphere 1010.0 30 < th dose dependent rect. 2 1
99 48.48 atmosphere 1005.0 30 > th dose independent rect. 2 1
104 48.49 atmosphere 995.0 30 > th dose dependent rect. 2 1
107 48.50 temperature 10.0 30 > th dose independent rect. 2 1
109 48.50 temperature 30.0 30 < th dose independent rect. 2 1
110 48.50 humidity 50.0 30 > th dose independent rect. 2 1
113 48.50 atmosphere 995.0 30 > th dose independent rect. 2 1
114 48.50 atmosphere 1010.0 30 < th dose independent rect. 2 1
116 48.50 radiation 1.0 30 < th dose independent rect. 2 1
121 48.50 precipitation 0.1 30 < th dose independent rect. 2 1
123 48.50 temperature 10.0 30 > th dose independent rect. 3 23
125 48.50 humidity 50.0 30 > th dose dependent rect. 2 1
130 48.50 radiation 1.0 30 < th dose dependent rect. 2 1
135 48.50 precipitation 0.1 30 < th dose dependent rect. 2 1
146 48.57 humidity 90.0 90 < th dose independent rect. 1 7
147 48.57 temperature 30.0 30 < th dose dependent rect. 2 1
153 48.62 wind 1.0 30 > th dose independent rect. 2 1
156 48.64 precipitation 0.1 30 < th dose independent rect. 3 23
159 48.64 precipitation 0.1 30 < th dose dependent rect. 3 23
209 48.81 wind 9.0 30 < th dose independent rect. 3 23
215 48.99 humidity 50.0 30 > th dose independent rect. 3 23
216 49.03 humidity 80.0 14400 < th dose dependent rect. 3 6
228 49.19 humidity 70.0 14400 > th dose independent rect. 8 1
231 49.22 humidity 80.0 14400 < th dose dependent rect. 7 2
235 49.28 radiation 10.0 10 > th dose independent rect. 16 16
240 49.33 humidity 70.0 14400 < th dose independent rect. 8 1
253 49.48 humidity 70.0 14400 > th dose independent rect. 4 5
254 49.48 humidity 70.0 14400 > th dose independent rect. 24 9
270 49.57 humidity 90.0 90 < th dose independent rect. 2 1
271 49.58 humidity 80.0 14400 < th dose dependent rect. 22 12
278 49.62 wind 1.0 14400 < th dose dependent rect. 6 1
294 49.70 humidity 90.0 90 < th dose dependent rect. 2 5
310 49.72 atmosphere 995.0 720 > th dose independent rect. 23 16
312 49.74 wind 7.0 720 < th dose dependent rect. 2 1
317 49.77 humidity 90.0 720 < th dose independent rect. 24 4
331 49.84 atmosphere 995.0 720 > th dose independent rect. 7 8
342 49.86 wind 1.0 14400 < th dose dependent rect. 4 3
360 49.96 temperature 25.0 10 > th dose independent rect. 7 1
389 49.99 humidity 60.0 14400 < th dose dependent rect. 12 1
392 50.01 wind 1.0 14400 < th dose independent rect. 6 1
401 50.06 wind 1.0 14400 < th dose independent rect. 4 3
403 50.06 radiation 10.0 10 < th dose dependent rect. 3 23
404 50.07 wind 1.0 14400 > th dose independent rect. 4 3
417 50.14 humidity 50.0 14400 > th dose independent rect. 15 1
419 50.15 humidity 60.0 14400 < th dose independent rect. 11 1
420 50.15 wind 9.0 720 < th dose independent rect. 19 8
423 50.17 wind 5.0 14400 < th dose independent rect. 11 1
427 50.18 temperature 30.0 1440 < th dose independent rect. 15 19
428 50.19 temperature 30.0 1440 > th dose independent rect. 14 21
429 50.19 atmosphere 1000.0 10 > th dose independent rect. 8 23
435 50.21 humidity 80.0 4320 > th dose independent rect. 7 6
436 50.21 radiation 40.0 10 < th dose independent rect. 3 23
445 50.22 radiation 1.0 720 < th dose dependent rect. 18 9
448 50.23 humidity 80.0 4320 < th dose independent rect. 7 6
450 50.23 temperature 30.0 1440 > th dose independent rect. 15 19
451 50.23 temperature 30.0 1440 < th dose independent rect. 14 21
452 50.23 humidity 50.0 14400 > th dose dependent rect. 8 1
454 50.23 humidity 70.0 4320 > th dose dependent rect. 3 10
460 50.24 wind 1.0 14400 < th dose dependent rect. 2 6
462 50.25 wind 1.0 10 < th dose independent rect. 12 15
468 50.26 temperature 30.0 1440 < th dose independent rect. 15 7
470 50.26 temperature 30.0 1440 < th dose independent rect. 15 9
472 50.26 temperature 30.0 1440 < th dose independent rect. 15 14
483 50.27 atmosphere 1000.0 720 > th dose independent rect. 3 7
490 50.28 temperature 30.0 1440 < th dose independent rect. 15 2
491 50.28 temperature 30.0 1440 > th dose independent rect. 15 4
508 50.29 temperature 30.0 1440 > th dose independent rect. 15 2
511 50.29 precipitation 0.1 720 < th dose independent rect. 15 8
515 50.29 precipitation 0.1 720 < th dose dependent rect. 15 8
517 50.30 temperature 30.0 1440 < th dose independent rect. 15 4
534 50.32 precipitation 0.1 720 < th dose independent rect. 19 8
538 50.32 precipitation 0.1 720 < th dose dependent rect. 19 8
542 50.33 wind 5.0 14400 < th dose independent rect. 10 5
576 50.34 humidity 90.0 10 < th dose dependent rect. 7 1
598 50.35 wind 7.0 14400 < th dose independent rect. 9 1
600 50.35 atmosphere 1005.0 30 > th dose independent rect. 2 6
607 50.35 humidity 50.0 4320 > th dose dependent rect. 23 16
608 50.36 atmosphere 1005.0 10 > th dose independent rect. 7 1
636 50.37 wind 1.0 10 < th dose independent rect. 17 10
640 50.37 radiation 10.0 10 < th dose independent rect. 3 23
672 50.38 wind 9.0 720 < th dose independent rect. 15 16
701 50.39 wind 5.0 14400 < th dose independent rect. 9 8
712 50.39 humidity 50.0 4320 > th dose dependent rect. 2 13
716 50.40 wind 5.0 14400 > th dose independent rect. 10 5
741 50.41 humidity 60.0 14400 < th dose dependent sin 2 NA
744 50.41 humidity 50.0 4320 > th dose dependent rect. 11 2
774 50.42 wind 5.0 14400 > th dose independent rect. 10 7
781 50.42 temperature 30.0 1440 > th dose dependent rect. 15 1
794 50.43 wind 1.0 14400 > th dose independent rect. 1 2
796 50.43 temperature 10.0 720 > th dose independent rect. 7 8
797 50.43 temperature 10.0 720 > th dose independent rect. 15 8
798 50.43 temperature 10.0 720 > th dose independent rect. 19 8
799 50.43 temperature 30.0 720 < th dose independent rect. 19 8
800 50.43 humidity 50.0 720 > th dose independent rect. 19 8
802 50.43 atmosphere 995.0 720 > th dose independent rect. 19 8
803 50.43 atmosphere 1015.0 720 < th dose independent rect. 7 8
804 50.43 radiation 1.0 720 < th dose independent rect. 19 8
809 50.43 temperature 10.0 720 > th dose independent rect. 3 16
810 50.43 temperature 10.0 720 > th dose independent rect. 15 16
811 50.43 temperature 10.0 720 > th dose independent rect. 23 16
812 50.43 humidity 50.0 4320 > th dose dependent sin 5 NA
814 50.43 wind 1.0 14400 < th dose dependent rect. 2 1
816 50.43 humidity 90.0 4320 < th dose dependent rect. 11 2
845 50.44 humidity 90.0 4320 < th dose dependent rect. 23 16
869 50.46 precipitation 0.1 14400 < th dose independent rect. 24 8
872 50.46 wind 3.0 14400 > th dose dependent rect. 11 1
876 50.46 precipitation 0.1 14400 < th dose dependent rect. 24 8
884 50.47 wind 3.0 14400 > th dose independent rect. 10 1
888 50.47 precipitation 0.1 14400 > th dose independent rect. 24 8
895 50.47 humidity 90.0 4320 < th dose dependent rect. 3 12
900 50.48 temperature 30.0 1440 < th dose independent sin 12 NA
927 50.48 humidity 60.0 14400 < th dose dependent rect. 10 23
934 50.49 wind 9.0 720 < th dose independent rect. 3 8
938 50.49 humidity 60.0 14400 < th dose independent rect. 19 17
940 50.49 atmosphere 1000.0 10 > th dose independent rect. 21 23
942 50.49 wind 7.0 14400 < th dose dependent rect. 11 1
975 50.50 humidity 90.0 4320 < th dose independent rect. 3 6
980 50.50 humidity 50.0 14400 > th dose independent rect. 13 8
986 50.50 humidity 50.0 14400 > th dose independent rect. 13 13
991 50.50 humidity 50.0 14400 > th dose independent rect. 13 16
1000 50.50 humidity 60.0 14400 < th dose dependent no NA NA