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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0199500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0427) R2 : 0.493
β1 : -1.36 (0.164) R2dD : 0.0923 R2D : 0.179
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.24 (0.256) R2dE : 0.0972 R2E : 0.24
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.66 (0.699) R2dD*E : 0.1 R2D*E : 0.261
γ1 : -0.221 (0.093) R2dN8 : 0.00537 R2N8 : 0.011
σ : 0.783
deviance : 282.44
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.05
memory length : 359
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.65
open length of G : 5.13

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.36 0.787 3.42 -1.39 0.231 2.14 0.716 -5.2 -0.184 20.7 30.01 263 8.93 5.92
299.64 0.806 3.45 -1.56 0.0901 2.86 2.56 -- -0.225 0.113 29.02 217 8.67 7.11
281.59 0.782 3.42 -1.4 0.237 2.09 -- -5.51 -0.178 20.7 30.26 264 8.88 5.85
304.45 0.813 3.5 -1.64 0.334 4.02 -- -- -0.254 19.4 25.26 437 8.71 2.05
282.44 0.783 3.42 -1.36 -- 2.24 -- -5.66 -0.221 -- 29.05 359 8.65 5.13
353 0.881 3.51 -2.06 0.612 -- -3.44 -- -0.513 13.7 -- -- -- --
398.82 0.935 3.53 -2.17 0.637 -- -- -- -0.53 14.5 -- -- -- --
307.83 0.817 3.47 -1.62 -- 4.22 -- -- -0.275 -- 25.15 440 8.67 2.15
365.82 0.891 3.43 -- 0.336 5.12 -- -- -0.0382 19.3 24.7 457 8.39 2.16
422.65 0.961 3.53 -2.2 -- -- -- -- -0.546 -- -- -- -- --
522.79 1.07 3.47 -- 0.679 -- -- -- -0.289 14.6 -- -- -- --
371.27 0.897 3.41 -- -- 5.14 -- -- -0.0368 -- 24.89 455 8.42 2.42
549.83 1.09 3.48 -- -- -- -- -- -0.302 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 280.95 temperature 30.0 270 < th dose dependent rect. 9 6
3 282.21 temperature 10.0 720 > th dose dependent rect. 3 7
17 286.27 temperature 30.0 720 < th dose dependent rect. 2 9
67 290.01 temperature 30.0 10 < th dose dependent rect. 10 6
75 290.48 temperature 30.0 270 < th dose dependent rect. 11 1
102 291.93 temperature 25.0 270 < th dose independent rect. 10 2
150 294.25 temperature 25.0 720 < th dose dependent rect. 7 1
231 297.67 precipitation 0.1 270 > th dose dependent rect. 23 12
235 297.71 precipitation 0.1 270 > th dose independent rect. 23 12
285 298.64 precipitation 0.1 270 < th dose independent sin 5 NA
286 298.64 precipitation 0.1 270 < th dose dependent sin 5 NA
287 298.65 temperature 15.0 720 > th dose dependent rect. 8 1
341 300.11 precipitation 0.1 270 > th dose independent sin 5 NA
354 300.36 temperature 15.0 10 > th dose dependent rect. 4 16
362 300.45 temperature 30.0 10 < th dose dependent rect. 7 9
376 300.66 precipitation 0.1 270 > th dose dependent sin 5 NA
382 300.77 temperature 25.0 720 < th dose dependent sin 5 NA
401 301.27 temperature 20.0 720 > th dose independent rect. 3 7
451 302.20 temperature 30.0 10 < th dose dependent rect. 24 16
452 302.21 temperature 30.0 270 < th dose dependent sin 3 NA
456 302.24 temperature 10.0 270 > th dose dependent sin 3 NA
462 302.37 precipitation 0.1 270 > th dose independent rect. 23 18
464 302.38 temperature 30.0 10 < th dose dependent rect. 2 14
478 302.52 temperature 10.0 10 > th dose dependent sin 1 NA
505 302.81 temperature 25.0 90 < th dose independent rect. 10 7
526 303.17 temperature 10.0 720 > th dose dependent sin 6 NA
589 303.99 temperature 30.0 10 < th dose dependent sin 1 NA
600 304.10 precipitation 0.1 270 > th dose dependent rect. 23 18
654 304.65 wind 7.0 270 > th dose independent rect. 4 4
694 305.22 wind 7.0 270 > th dose dependent rect. 4 4
797 306.25 wind 5.0 270 < th dose independent rect. 2 9
988 308.45 precipitation 0.1 720 > th dose independent rect. 2 2
990 308.45 precipitation 0.1 720 > th dose dependent rect. 2 2