Os03g0199300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0199300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.29 | 0.349 | 8.4 | -0.036 | 1.62 | 0.33 | -0.166 | -0.864 | -0.166 | 22 | 20.5 | 463 | -- | -- |
| 57.28 | 0.352 | 8.38 | 0.0976 | 1.58 | 0.42 | -0.272 | -- | -0.14 | 21.9 | 20.6 | 673 | -- | -- |
| 55.39 | 0.347 | 8.4 | -0.0383 | 1.62 | 0.328 | -- | -0.9 | -0.167 | 22 | 20.5 | 465 | -- | -- |
| 57.65 | 0.354 | 8.38 | 0.113 | 1.58 | 0.439 | -- | -- | -0.138 | 21.9 | 20.6 | 673 | -- | -- |
| 168.84 | 0.605 | 8.44 | -0.315 | -- | 1.1 | -- | -1.12 | -0.498 | -- | 25.3 | 739 | -- | -- |
| 62.95 | 0.372 | 8.36 | 0.26 | 1.65 | -- | -0.328 | -- | -0.0433 | 21.9 | -- | -- | -- | -- |
| 63.37 | 0.373 | 8.36 | 0.273 | 1.65 | -- | -- | -- | -0.0429 | 21.9 | -- | -- | -- | -- |
| 171.39 | 0.61 | 8.41 | -0.0498 | -- | 1.11 | -- | -- | -0.445 | -- | 25.2 | 742 | -- | -- |
| 57.99 | 0.355 | 8.38 | -- | 1.59 | 0.461 | -- | -- | -0.143 | 21.9 | 20.6 | 675 | -- | -- |
| 226.1 | 0.703 | 8.31 | 0.291 | -- | -- | -- | -- | -0.0431 | -- | -- | -- | -- | -- |
| 65.33 | 0.378 | 8.37 | -- | 1.65 | -- | -- | -- | -0.0733 | 21.9 | -- | -- | -- | -- |
| 171.42 | 0.61 | 8.4 | -- | -- | 1.09 | -- | -- | -0.434 | -- | 25.24 | 743 | -- | -- |
| 228.34 | 0.705 | 8.32 | -- | -- | -- | -- | -- | -0.0753 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.76 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 13 |
| 10 | 53.29 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 8 |
| 29 | 53.68 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 34 | 53.71 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 4 |
| 40 | 53.75 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 44 | 53.80 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 45 | 53.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 52 | 53.85 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 19 |
| 53 | 53.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 67 | 53.98 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 68 | 53.99 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 86 | 54.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 11 |
| 88 | 54.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 12 |
| 91 | 54.15 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 4 |
| 100 | 54.19 | temperature | 20 | 270 | < th | dose independent | sin | 7 | NA |
| 114 | 54.27 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 130 | 54.32 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 11 |
| 133 | 54.33 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 180 | 54.45 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 226 | 54.53 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 16 |
| 227 | 54.53 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 232 | 54.54 | humidity | 90 | 14400 | > th | dose independent | sin | 5 | NA |
| 234 | 54.54 | humidity | 80 | 14400 | > th | dose dependent | sin | 7 | NA |
| 249 | 54.57 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 270 | 54.60 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 11 |
| 282 | 54.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 299 | 54.64 | humidity | 90 | 14400 | < th | dose independent | sin | 6 | NA |
| 347 | 54.71 | humidity | 80 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 427 | 54.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 453 | 54.84 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 463 | 54.85 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 495 | 54.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 517 | 54.90 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 527 | 54.91 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 532 | 54.92 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 533 | 54.92 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 1 |
| 547 | 54.93 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 642 | 55.03 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 661 | 55.05 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 676 | 55.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 678 | 55.06 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 732 | 55.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 773 | 55.13 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 831 | 55.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 16 |
| 883 | 55.21 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 953 | 55.26 | humidity | 90 | 14400 | < th | dose independent | rect. | 13 | 19 |
| 955 | 55.26 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 990 | 55.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 23 |