Os03g0199100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF677 family protein.
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Os03g0199100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF677 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 300.92 | 0.815 | 4.84 | -2.68 | 0.725 | 0.726 | 0.78 | 4.59 | -0.894 | 2.47 | 1004 | 4409 | -- | -- |
| 326.87 | 0.842 | 4.83 | -2.59 | 0.746 | 0.909 | 0.717 | -- | -0.944 | 2.41 | 1005 | 4306 | -- | -- |
| 303.05 | 0.811 | 4.85 | -2.7 | 0.73 | 0.728 | -- | 4.52 | -0.9 | 2.63 | 1004 | 4413 | -- | -- |
| 327.98 | 0.843 | 4.83 | -2.6 | 0.74 | 0.929 | -- | -- | -0.972 | 2.78 | 1005 | 4297 | -- | -- |
| 332.91 | 0.85 | 4.82 | -2.71 | -- | 0.768 | -- | 4.71 | -0.869 | -- | 1004 | 4973 | -- | -- |
| 351.83 | 0.879 | 4.78 | -2.65 | 0.72 | -- | 0.611 | -- | -0.775 | 2.55 | -- | -- | -- | -- |
| 353.13 | 0.88 | 4.78 | -2.67 | 0.724 | -- | -- | -- | -0.779 | 2.68 | -- | -- | -- | -- |
| 358.32 | 0.882 | 4.81 | -2.52 | -- | 0.931 | -- | -- | -0.947 | -- | 1005 | 4875 | -- | -- |
| 490.99 | 1.03 | 4.75 | -- | 0.685 | 1.36 | -- | -- | -0.63 | 2.27 | 999.1 | 4965 | -- | -- |
| 383.71 | 0.915 | 4.77 | -2.64 | -- | -- | -- | -- | -0.76 | -- | -- | -- | -- | -- |
| 540.46 | 1.09 | 4.71 | -- | 0.672 | -- | -- | -- | -0.482 | 2.63 | -- | -- | -- | -- |
| 516.95 | 1.06 | 4.75 | -- | -- | 1.36 | -- | -- | -0.618 | -- | 999 | 4941 | -- | -- |
| 566.89 | 1.11 | 4.71 | -- | -- | -- | -- | -- | -0.468 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 294.89 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 4 | 295.79 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 15 | 297.29 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 23 | 298.09 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 39 | 298.80 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 44 | 299.15 | wind | 3.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 91 | 300.94 | atmosphere | 1005.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 103 | 301.11 | atmosphere | 1005.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 127 | 301.48 | wind | 3.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 154 | 301.82 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 231 | 302.40 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 19 | 21 |
| 252 | 302.49 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 281 | 302.61 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 288 | 302.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 292 | 302.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 324 | 302.81 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 6 | 19 |
| 334 | 302.86 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 5 | 20 |
| 346 | 302.92 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 366 | 303.02 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 407 | 303.19 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 9 | 17 |
| 447 | 303.29 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 9 | 23 |
| 451 | 303.30 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 9 | 23 |
| 452 | 303.31 | atmosphere | 1005.0 | 4320 | > th | dose independent | no | NA | NA |
| 464 | 303.35 | atmosphere | 1005.0 | 4320 | < th | dose independent | no | NA | NA |
| 528 | 303.63 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 529 | 303.63 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 635 | 304.76 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 651 | 305.03 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 713 | 305.64 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 774 | 306.06 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 5 | 11 |
| 775 | 306.06 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 5 | 11 |
| 792 | 306.20 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 5 | 4 |
| 798 | 306.24 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 807 | 306.28 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 820 | 306.35 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 891 | 306.69 | atmosphere | 1005.0 | 4320 | < th | dose dependent | sin | 7 | NA |
| 899 | 306.74 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 931 | 306.83 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 10 | 5 |