Os03g0198400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) (Fragment).
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Os03g0198400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.66 | 0.357 | 10.5 | -0.472 | 0.925 | 0.342 | 1.24 | -1.46 | -0.256 | 17.7 | 19.4 | 2164 | -- | -- |
| 60.21 | 0.361 | 10.4 | -0.3 | 0.944 | 0.699 | 1.13 | -- | -0.233 | 17.7 | 19 | 2608 | -- | -- |
| 60.36 | 0.362 | 10.5 | -0.544 | 0.961 | 0.361 | -- | -1.6 | -0.275 | 17.8 | 19.38 | 2681 | -- | -- |
| 63.46 | 0.371 | 10.4 | -0.35 | 0.958 | 0.728 | -- | -- | -0.227 | 17.8 | 19 | 2710 | -- | -- |
| 106.36 | 0.48 | 10.4 | -0.5 | -- | 0.399 | -- | -1.31 | -0.275 | -- | 19.4 | 2079 | -- | -- |
| 68.27 | 0.387 | 10.4 | 0.0165 | 0.926 | -- | 1.24 | -- | -0.0861 | 17.8 | -- | -- | -- | -- |
| 72.01 | 0.397 | 10.4 | 0.00772 | 0.933 | -- | -- | -- | -0.0814 | 17.9 | -- | -- | -- | -- |
| 109.02 | 0.486 | 10.4 | -0.318 | -- | 0.719 | -- | -- | -0.235 | -- | 19.1 | 1986 | -- | -- |
| 66.14 | 0.379 | 10.4 | -- | 0.907 | 0.603 | -- | -- | -0.174 | 17.7 | 18.8 | 2657 | -- | -- |
| 117.17 | 0.506 | 10.4 | -0.0205 | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
| 72.01 | 0.397 | 10.4 | -- | 0.933 | -- | -- | -- | -0.0823 | 17.9 | -- | -- | -- | -- |
| 111.08 | 0.491 | 10.4 | -- | -- | 0.55 | -- | -- | -0.174 | -- | 19.05 | 1979 | -- | -- |
| 117.18 | 0.505 | 10.4 | -- | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.81 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 2 | 54.16 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 3 | 54.23 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 4 | 54.23 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 5 | 54.86 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 6 | 54.86 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 7 | 54.92 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 8 | 54.92 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 29 | 55.50 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 42 | 55.67 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 61 | 56.07 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 79 | 56.46 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 83 | 56.52 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 86 | 56.71 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 103 | 57.12 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 105 | 57.16 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 109 | 57.18 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 9 |
| 146 | 57.40 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 147 | 57.41 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 168 | 57.52 | temperature | 20.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 170 | 57.52 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 172 | 57.52 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 178 | 57.54 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 181 | 57.55 | temperature | 20.0 | 1440 | < th | dose independent | sin | 12 | NA |
| 270 | 57.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 278 | 57.83 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 286 | 57.85 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 317 | 57.95 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 340 | 58.01 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 362 | 58.06 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 368 | 58.07 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 380 | 58.11 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 18 |
| 381 | 58.12 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 423 | 58.19 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 424 | 58.20 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 425 | 58.20 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 431 | 58.20 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 9 |
| 432 | 58.20 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 440 | 58.21 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 462 | 58.23 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 464 | 58.24 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 469 | 58.24 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 501 | 58.26 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 505 | 58.27 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 507 | 58.27 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 522 | 58.29 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 525 | 58.30 | humidity | 90.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 526 | 58.30 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 529 | 58.30 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 541 | 58.32 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 542 | 58.32 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 552 | 58.33 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 559 | 58.34 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 569 | 58.34 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 598 | 58.40 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 606 | 58.40 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 609 | 58.41 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 639 | 58.44 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 20 |
| 674 | 58.48 | humidity | 90.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 701 | 58.49 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 753 | 58.53 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 763 | 58.54 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 780 | 58.55 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 820 | 58.58 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 841 | 58.59 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 843 | 58.59 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 844 | 58.59 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 847 | 58.60 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 880 | 58.61 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 24 | 7 |
| 881 | 58.62 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 884 | 58.62 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 6 |
| 997 | 58.69 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 998 | 58.69 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 10 |