Os03g0197700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os03g0197700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.77 | 0.417 | 8.26 | 0.94 | 0.6 | 2.22 | 0.369 | -0.258 | 0.14 | 20.1 | 25.23 | 767 | -- | -- |
| 78.84 | 0.414 | 8.26 | 0.905 | 0.592 | 2.24 | 0.422 | -- | 0.13 | 20.1 | 25.13 | 770 | -- | -- |
| 79.14 | 0.414 | 8.26 | 0.946 | 0.601 | 2.22 | -- | -0.361 | 0.143 | 20 | 25.23 | 756 | -- | -- |
| 79.38 | 0.415 | 8.27 | 0.883 | 0.594 | 2.24 | -- | -- | 0.125 | 20 | 25.05 | 757 | -- | -- |
| 89.54 | 0.441 | 8.23 | 1.13 | -- | 1.94 | -- | -0.315 | 0.191 | -- | 26.5 | 2701 | -- | -- |
| 153.71 | 0.581 | 8.36 | 0.253 | 0.373 | -- | 0.33 | -- | -0.347 | 18.2 | -- | -- | -- | -- |
| 153.94 | 0.581 | 8.36 | 0.25 | 0.375 | -- | -- | -- | -0.345 | 18 | -- | -- | -- | -- |
| 88.47 | 0.438 | 8.25 | 0.955 | -- | 2.17 | -- | -- | 0.128 | -- | 29.8 | 1360 | -- | -- |
| 98.81 | 0.463 | 8.32 | -- | 0.526 | 2.09 | -- | -- | -0.00568 | 19.8 | 25.1 | 744 | -- | -- |
| 161.24 | 0.593 | 8.36 | 0.239 | -- | -- | -- | -- | -0.354 | -- | -- | -- | -- | -- |
| 155.59 | 0.583 | 8.37 | -- | 0.371 | -- | -- | -- | -0.373 | 18.1 | -- | -- | -- | -- |
| 107.1 | 0.482 | 8.3 | -- | -- | 1.7 | -- | -- | -0.091 | -- | 31.2 | 1351 | -- | -- |
| 162.74 | 0.595 | 8.36 | -- | -- | -- | -- | -- | -0.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.66 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 2 | 66.66 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 11 | 69.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 30 | 70.05 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 211 | 75.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 243 | 76.31 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 244 | 76.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 289 | 76.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 574 | 78.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 656 | 78.90 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 775 | 79.36 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 812 | 79.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 829 | 79.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 841 | 79.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 846 | 79.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 963 | 79.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 6 |