Os03g0197400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to COP9 signalosome complex subunit 4 (Signalosome subunit 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4).
FiT-DB / Search/ Help/ Sample detail
|
Os03g0197400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to COP9 signalosome complex subunit 4 (Signalosome subunit 4) (Constitutive photomorphogenesis protein 8) (FUSCA protein 4) (FUSCA4) (AtS4).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.81 | 0.187 | 12.1 | 0.225 | 0.394 | -0.1 | 0.18 | -1.43 | 0.0353 | 17.2 | 20.7 | 3210 | -- | -- |
| 18.59 | 0.201 | 12.1 | 0.418 | 0.39 | 0.214 | 0.148 | -- | 0.0695 | 17.2 | 19.6 | 7168 | -- | -- |
| 15.89 | 0.186 | 12.1 | 0.224 | 0.395 | -0.0934 | -- | -1.42 | 0.0355 | 17.2 | 20.69 | 3165 | -- | -- |
| 17.73 | 0.196 | 12.1 | 0.358 | 0.382 | 0.351 | -- | -- | 0.0679 | 17.2 | 16.6 | 11255 | -- | -- |
| 24.02 | 0.228 | 12.1 | 0.233 | -- | -0.0931 | -- | -1.34 | 0.0365 | -- | 20.7 | 2938 | -- | -- |
| 19.22 | 0.206 | 12.1 | 0.563 | 0.389 | -- | 0.177 | -- | 0.131 | 17.2 | -- | -- | -- | -- |
| 19.3 | 0.206 | 12.1 | 0.563 | 0.39 | -- | -- | -- | 0.132 | 17.2 | -- | -- | -- | -- |
| 25.65 | 0.236 | 12.1 | 0.366 | -- | 0.318 | -- | -- | 0.0718 | -- | 13.8 | 13241 | -- | -- |
| 18.8 | 0.202 | 12.1 | -- | 0.391 | 0.507 | -- | -- | -0.0221 | 17.1 | 15.96 | 47520 | -- | -- |
| 27.25 | 0.244 | 12.1 | 0.549 | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
| 27.65 | 0.246 | 12.1 | -- | 0.38 | -- | -- | -- | 0.0691 | 17.2 | -- | -- | -- | -- |
| 26.82 | 0.241 | 12.1 | -- | -- | 0.497 | -- | -- | -0.0249 | -- | 15.33 | 47520 | -- | -- |
| 35.21 | 0.277 | 12.1 | -- | -- | -- | -- | -- | 0.061 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 2 | 15.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 17 | 15.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 21 | 15.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 40 | 15.75 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 49 | 15.77 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 84 | 15.82 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 116 | 15.87 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 117 | 15.87 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 128 | 15.88 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 138 | 15.89 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 253 | 15.96 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 285 | 15.98 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 466 | 16.06 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 509 | 16.08 | temperature | 15 | 4320 | > th | dose dependent | sin | 11 | NA |
| 527 | 16.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 564 | 16.10 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 599 | 16.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 773 | 16.18 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 797 | 16.19 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 814 | 16.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 827 | 16.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 830 | 16.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 859 | 16.21 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 861 | 16.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 888 | 16.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 920 | 16.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 921 | 16.23 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 23 |