Os03g0196500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0196500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Cyclin-like F-box domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188 | 0.644 | 6.77 | -2.11 | 2.12 | 8.19 | 1.65 | -37.6 | -0.762 | 7.02 | 995.6 | 731 | -- | -- |
| 196.52 | 0.653 | 6.67 | -1.79 | 2.09 | 3.33 | 2.4 | -- | -0.792 | 6.97 | 995.7 | 400 | -- | -- |
| 194.9 | 0.65 | 6.78 | -2.13 | 2.12 | 8.11 | -- | -37.9 | -0.761 | 7.07 | 995.6 | 797 | -- | -- |
| 195.16 | 0.651 | 6.67 | -1.57 | 2.15 | 1.88 | -- | -- | -0.751 | 7.06 | 995.6 | 742 | -- | -- |
| 424.66 | 0.96 | 6.84 | -2.15 | -- | 8.12 | -- | -37.6 | -0.723 | -- | 996.4 | 837 | -- | -- |
| 206.96 | 0.674 | 6.69 | -1.52 | 2.08 | -- | 1.54 | -- | -0.789 | 6.94 | -- | -- | -- | -- |
| 213.06 | 0.684 | 6.69 | -1.49 | 2.08 | -- | -- | -- | -0.792 | 6.99 | -- | -- | -- | -- |
| 424.24 | 0.959 | 6.73 | -1.52 | -- | 1.85 | -- | -- | -0.726 | -- | 996.4 | 1189 | -- | -- |
| 258.41 | 0.749 | 6.65 | -- | 2.11 | 1.67 | -- | -- | -0.587 | 7.1 | 995.6 | 738 | -- | -- |
| 440.69 | 0.981 | 6.74 | -1.45 | -- | -- | -- | -- | -0.754 | -- | -- | -- | -- | -- |
| 271.62 | 0.771 | 6.66 | -- | 2.06 | -- | -- | -- | -0.626 | 7.04 | -- | -- | -- | -- |
| 481.79 | 1.02 | 6.69 | -- | -- | 1.63 | -- | -- | -0.576 | -- | 996 | 2523 | -- | -- |
| 496.02 | 1.04 | 6.7 | -- | -- | -- | -- | -- | -0.593 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.01 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 14 |
| 3 | 180.85 | atmosphere | 995 | 720 | > th | dose independent | rect. | 5 | 22 |
| 4 | 180.98 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 15 | 15 |
| 10 | 181.30 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 17 | 10 |
| 17 | 181.96 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 19 |
| 21 | 182.07 | atmosphere | 1000 | 10 | < th | dose dependent | sin | 12 | NA |
| 22 | 182.08 | atmosphere | 1000 | 270 | < th | dose independent | sin | 14 | NA |
| 30 | 182.30 | atmosphere | 995 | 720 | > th | dose independent | rect. | 5 | 14 |
| 31 | 182.40 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 35 | 182.50 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 18 | 11 |
| 40 | 182.55 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 90 | 183.20 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 18 | 12 |
| 95 | 183.32 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 18 | 10 |
| 115 | 183.57 | atmosphere | 995 | 720 | > th | dose independent | rect. | 23 | 18 |
| 123 | 183.68 | atmosphere | 1000 | 30 | > th | dose independent | sin | 12 | NA |
| 124 | 183.68 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 16 | 12 |
| 171 | 184.20 | atmosphere | 995 | 720 | > th | dose independent | rect. | 15 | 2 |
| 190 | 184.37 | atmosphere | 995 | 720 | > th | dose independent | rect. | 14 | 5 |
| 215 | 184.66 | atmosphere | 995 | 720 | > th | dose independent | rect. | 7 | 19 |
| 223 | 184.74 | atmosphere | 995 | 720 | > th | dose independent | rect. | 7 | 10 |
| 258 | 185.12 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 272 | 185.29 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 279 | 185.36 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 19 |
| 282 | 185.37 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 17 | 2 |
| 291 | 185.42 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 295 | 185.45 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 19 |
| 299 | 185.46 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 303 | 185.53 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 304 | 185.53 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 312 | 185.60 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 323 | 185.68 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 22 | 10 |
| 324 | 185.69 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 334 | 185.75 | atmosphere | 995 | 720 | > th | dose independent | rect. | 9 | 17 |
| 337 | 185.78 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 19 | 3 |
| 340 | 185.79 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 357 | 185.91 | atmosphere | 1000 | 720 | > th | dose independent | sin | 17 | NA |
| 366 | 185.94 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 12 | 12 |
| 377 | 185.98 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 386 | 186.01 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 16 | 14 |
| 435 | 186.22 | atmosphere | 995 | 720 | > th | dose independent | sin | 8 | NA |
| 485 | 186.39 | atmosphere | 995 | 720 | > th | dose independent | rect. | 21 | 22 |
| 492 | 186.40 | atmosphere | 1000 | 720 | < th | dose dependent | sin | 18 | NA |
| 495 | 186.41 | atmosphere | 995 | 720 | > th | dose independent | rect. | 1 | 16 |
| 617 | 186.79 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 1 |
| 626 | 186.83 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 3 |
| 672 | 186.95 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 1 |
| 677 | 186.96 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 16 | NA |
| 679 | 186.97 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 734 | 187.12 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 786 | 187.25 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 828 | 187.41 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 19 |
| 861 | 187.50 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 874 | 187.54 | wind | 5 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 879 | 187.55 | wind | 5 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 885 | 187.58 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 8 |
| 891 | 187.59 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 17 | 3 |
| 896 | 187.60 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 900 | 187.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 15 |
| 977 | 187.77 | atmosphere | 995 | 720 | < th | dose independent | sin | 8 | NA |
| 980 | 187.78 | atmosphere | 995 | 720 | > th | dose independent | sin | 0 | NA |