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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0196000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Sulfate permease (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0153) R2 : 0.000123
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00763 (0.0323) R2dN8 : 0.000158 R2N8 : 0.000123
σ : 0.289
deviance : 38.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.2 0.283 3.03 0.139 0.0299 1.28 0.223 5.58 0.00511 12.3 7.1 725 -- --
38.08 0.287 2.99 0.073 0.0147 0.0751 0.126 -- 0.0163 13.3 4.236 1432 -- --
36.34 0.281 3.03 0.138 0.0448 1.32 -- 5.7 0.0049 15.6 7.341 688 -- --
38.11 0.288 2.99 0.0881 0.0233 0.0793 -- -- 0.0249 16.5 4.85 1359 -- --
36.44 0.281 3.03 0.143 -- 1.33 -- 5.77 0.00797 -- 7.343 688 -- --
38.12 0.289 2.99 0.0513 0.023 -- -0.139 -- 0.0139 20.9 -- -- -- --
38.15 0.289 2.99 0.0572 0.0381 -- -- -- 0.0147 17.8 -- -- -- --
38.08 0.287 2.99 0.102 -- 0.308 -- -- 0.0151 -- 9.5 401 -- --
38.22 0.288 2.99 -- 0.0367 0.044 -- -- 0.00833 17.3 4.821 1432 -- --
38.22 0.289 2.99 0.056 -- -- -- -- 0.0139 -- -- -- -- --
38.23 0.289 2.99 -- 0.0372 -- -- -- 0.00837 17.9 -- -- -- --
38.12 0.288 2.99 -- -- 0.219 -- -- 0.0033 -- 9.9 389 -- --
38.3 0.289 2.99 -- -- -- -- -- 0.00763 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.31 wind 7 720 > th dose dependent rect. 13 5
7 35.40 wind 7 720 > th dose dependent rect. 13 3
63 35.59 wind 7 720 > th dose independent rect. 13 5
73 35.60 wind 7 720 > th dose independent rect. 13 2
74 35.61 wind 7 720 > th dose dependent sin 16 NA
85 35.65 wind 7 720 < th dose independent rect. 13 16
103 35.70 wind 7 1440 < th dose independent rect. 13 2
126 35.74 wind 7 720 > th dose dependent rect. 17 1
130 35.75 wind 7 720 > th dose independent rect. 13 16
212 35.83 wind 7 720 < th dose independent rect. 13 6
219 35.85 wind 9 720 > th dose independent sin 15 NA
220 35.85 wind 9 720 < th dose independent sin 16 NA
233 35.87 wind 7 720 < th dose independent rect. 11 8
267 35.91 wind 7 720 < th dose independent rect. 13 8
366 35.98 wind 9 720 > th dose independent rect. 17 1
476 36.08 atmosphere 1000 270 < th dose independent rect. 21 1
489 36.10 wind 1 270 < th dose independent rect. 19 1
496 36.10 atmosphere 1000 10 < th dose independent rect. 21 5
506 36.10 wind 1 270 < th dose dependent rect. 19 1
521 36.11 atmosphere 1000 270 < th dose independent rect. 19 1
523 36.11 atmosphere 1000 90 < th dose independent rect. 23 2
524 36.11 atmosphere 1000 10 < th dose independent rect. 23 3
536 36.11 atmosphere 1000 270 < th dose dependent rect. 19 1
538 36.11 atmosphere 1000 90 < th dose dependent rect. 22 1
539 36.11 atmosphere 1000 10 < th dose dependent rect. 23 1
612 36.13 atmosphere 1000 10 < th dose dependent rect. 17 7
613 36.13 atmosphere 1000 90 < th dose dependent rect. 17 7
620 36.14 atmosphere 1000 10 < th dose independent rect. 23 1
788 36.19 wind 9 720 < th dose independent sin 11 NA
875 36.21 wind 7 720 < th dose independent rect. 3 16
876 36.21 wind 7 720 > th dose dependent no NA NA
970 36.23 wind 7 720 < th dose independent rect. 13 23