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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0195800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Sulfate transporter (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.22 (0.0347) R2 : 0.00021
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0226 (0.0731) R2dN8 : 0.000271 R2N8 : 0.00021
σ : 0.654
deviance : 196.24
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.71 0.632 3.43 -1.32 0.208 6.9 0.075 -34.5 0.052 3.83 1001 35 -- --
184.39 0.637 3.22 -0.134 0.208 1 0.174 -- 0.05 3.58 1001 35 -- --
180.71 0.626 3.42 -1.33 0.21 6.89 -- -34.4 0.0534 3.88 1001 35 -- --
184.13 0.636 3.21 -0.14 0.216 0.938 -- -- 0.0534 3.81 1002 43 -- --
183.11 0.63 3.43 -1.31 -- 6.88 -- -34.5 0.0566 -- 1001 34 -- --
193.93 0.653 3.22 -0.0438 0.199 -- 0.146 -- 0.014 3.64 -- -- -- --
193.98 0.652 3.22 -0.0461 0.201 -- -- -- 0.0131 3.9 -- -- -- --
186.7 0.639 3.22 -0.13 -- 0.92 -- -- 0.0584 -- 1002 43 -- --
184.63 0.636 3.21 -- 0.213 0.902 -- -- 0.0674 3.82 1002 44 -- --
196.2 0.655 3.22 -0.0378 -- -- -- -- 0.0184 -- -- -- -- --
194.04 0.652 3.22 -- 0.2 -- -- -- 0.0182 3.91 -- -- -- --
187.14 0.639 3.21 -- -- 0.891 -- -- 0.0711 -- 1002 43 -- --
196.24 0.654 3.22 -- -- -- -- -- 0.0226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.62 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 176.79 atmosphere 1000.0 1440 > th dose independent rect. 24 1
11 178.24 atmosphere 1000.0 1440 < th dose independent rect. 1 1
16 178.33 atmosphere 1000.0 1440 > th dose independent rect. 20 9
19 178.37 atmosphere 1000.0 1440 < th dose independent rect. 20 7
22 178.43 atmosphere 1000.0 1440 > th dose independent rect. 20 7
79 179.57 atmosphere 1000.0 720 > th dose independent rect. 18 16
84 179.65 atmosphere 1000.0 90 < th dose independent rect. 17 21
85 179.65 atmosphere 1000.0 30 < th dose dependent rect. 17 22
87 179.66 atmosphere 1000.0 270 < th dose independent rect. 19 19
113 179.94 atmosphere 1000.0 90 < th dose independent rect. 23 15
154 180.33 atmosphere 1000.0 720 > th dose independent rect. 3 8
157 180.34 atmosphere 1000.0 270 < th dose independent sin 9 NA
165 180.41 atmosphere 1000.0 270 > th dose independent sin 9 NA
168 180.43 atmosphere 1000.0 90 < th dose independent rect. 8 22
174 180.48 atmosphere 1000.0 720 > th dose independent rect. 22 17
180 180.50 atmosphere 1000.0 10 < th dose independent sin 6 NA
198 180.57 temperature 25.0 90 > th dose independent rect. 1 1
208 180.61 atmosphere 1000.0 1440 < th dose independent sin 9 NA
220 180.67 atmosphere 1000.0 30 > th dose independent sin 7 NA
244 180.74 temperature 25.0 90 > th dose dependent rect. 1 1
262 180.79 atmosphere 995.0 30 > th dose dependent rect. 3 23
269 180.85 atmosphere 1000.0 1440 > th dose independent sin 9 NA
272 180.88 atmosphere 1000.0 1440 > th dose independent rect. 4 1
281 180.91 atmosphere 1000.0 10 < th dose dependent rect. 24 7
301 180.95 atmosphere 1000.0 90 < th dose dependent rect. 24 6
313 180.98 atmosphere 1000.0 30 < th dose dependent rect. 9 22
342 181.09 atmosphere 1000.0 90 > th dose independent rect. 22 13
350 181.13 atmosphere 1000.0 30 < th dose dependent rect. 20 23
411 181.34 atmosphere 1000.0 10 < th dose independent rect. 24 7
444 181.46 atmosphere 1000.0 10 < th dose dependent rect. 17 18
465 181.54 temperature 30.0 30 > th dose dependent rect. 17 17
472 181.56 wind 9.0 14400 > th dose dependent rect. 13 4
480 181.60 atmosphere 1000.0 270 < th dose independent no NA NA
486 181.61 atmosphere 1000.0 270 < th dose independent rect. 12 23
504 181.67 atmosphere 1000.0 10 < th dose independent rect. 24 11
511 181.68 wind 9.0 14400 > th dose dependent rect. 13 1
516 181.70 wind 9.0 14400 > th dose independent rect. 15 1
541 181.78 atmosphere 1000.0 270 > th dose independent no NA NA
547 181.79 atmosphere 1000.0 10 < th dose dependent rect. 12 23
609 181.96 atmosphere 1000.0 90 < th dose dependent sin 7 NA
616 181.97 atmosphere 1000.0 270 < th dose independent rect. 5 23
631 182.00 atmosphere 1000.0 90 < th dose dependent rect. 21 17
648 182.05 atmosphere 1000.0 90 < th dose independent rect. 3 23
650 182.06 atmosphere 1000.0 10 < th dose independent rect. 17 18
661 182.07 atmosphere 1000.0 10 < th dose dependent rect. 4 23
662 182.08 temperature 20.0 10 > th dose independent rect. 2 1
663 182.08 atmosphere 1005.0 10 > th dose independent rect. 2 1
718 182.17 humidity 80.0 30 > th dose independent rect. 2 1
721 182.17 temperature 15.0 10 > th dose dependent rect. 2 1
727 182.18 atmosphere 995.0 30 > th dose dependent rect. 2 1
735 182.20 atmosphere 1000.0 30 < th dose dependent no NA NA
738 182.20 atmosphere 1000.0 30 < th dose dependent rect. 1 23
747 182.21 atmosphere 1000.0 30 < th dose dependent rect. 23 23
748 182.22 wind 1.0 30 > th dose independent rect. 2 1
749 182.22 wind 9.0 30 < th dose independent rect. 2 1
750 182.22 temperature 10.0 30 > th dose independent rect. 2 1
752 182.22 temperature 25.0 30 < th dose independent rect. 2 1
754 182.22 humidity 50.0 30 > th dose independent rect. 2 1
758 182.22 atmosphere 1010.0 30 < th dose independent rect. 2 1
760 182.22 radiation 1.0 30 < th dose independent rect. 2 1
765 182.22 precipitation 0.1 30 < th dose independent rect. 2 1
766 182.22 temperature 10.0 30 > th dose independent rect. 3 23
770 182.22 radiation 1.0 30 < th dose dependent rect. 2 1
775 182.22 precipitation 0.1 30 < th dose dependent rect. 2 1
780 182.23 wind 9.0 14400 > th dose independent rect. 13 4
785 182.23 humidity 50.0 30 > th dose dependent rect. 2 1
797 182.25 wind 9.0 1440 < th dose independent rect. 3 1
799 182.25 temperature 10.0 1440 > th dose independent rect. 3 1
802 182.25 temperature 30.0 1440 < th dose independent rect. 3 1
806 182.25 humidity 50.0 1440 > th dose independent rect. 3 1
816 182.25 radiation 1.0 1440 < th dose independent rect. 3 1
836 182.25 temperature 10.0 1440 > th dose independent rect. 4 23
842 182.25 radiation 1.0 1440 < th dose dependent rect. 3 1
868 182.27 atmosphere 1010.0 30 < th dose dependent rect. 2 1
889 182.29 atmosphere 1000.0 10 > th dose independent rect. 22 14
898 182.30 wind 3.0 30 < th dose dependent rect. 2 1
904 182.32 atmosphere 1000.0 10 > th dose independent no NA NA
922 182.34 temperature 30.0 30 < th dose dependent rect. 2 1
931 182.35 wind 9.0 30 < th dose dependent rect. 2 1
942 182.38 wind 3.0 30 < th dose independent rect. 2 1
955 182.40 atmosphere 1000.0 10 < th dose independent rect. 22 13
963 182.41 atmosphere 1000.0 10 < th dose independent rect. 4 2
974 182.42 atmosphere 1000.0 90 > th dose independent rect. 21 23
989 182.43 atmosphere 1000.0 10 < th dose dependent rect. 4 2
994 182.44 atmosphere 1000.0 90 < th dose dependent rect. 24 9