Os03g0195400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0195400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.26 | 0.618 | 3.95 | 1.91 | 0.842 | -0.865 | 0.611 | -2.99 | 0.659 | 5.07 | 22.8 | 4425 | -- | -- |
| 180.71 | 0.631 | 4.05 | 1.57 | 0.936 | -0.359 | 0.636 | -- | 0.585 | 4.76 | 33.78 | 6759 | -- | -- |
| 173.25 | 0.613 | 3.96 | 2.04 | 0.853 | -0.657 | -- | -2.87 | 0.679 | 4.94 | 23.72 | 3059 | -- | -- |
| 181.17 | 0.631 | 4.05 | 1.56 | 0.885 | -0.374 | -- | -- | 0.577 | 4.67 | 23.72 | 3059 | -- | -- |
| 209.97 | 0.675 | 3.98 | 2.09 | -- | -0.676 | -- | -2.83 | 0.687 | -- | 25 | 2839 | -- | -- |
| 182.02 | 0.632 | 4.03 | 1.64 | 0.851 | -- | 0.667 | -- | 0.637 | 5.06 | -- | -- | -- | -- |
| 183.07 | 0.634 | 4.04 | 1.64 | 0.854 | -- | -- | -- | 0.634 | 4.9 | -- | -- | -- | -- |
| 218.22 | 0.688 | 4.06 | 1.51 | -- | -0.398 | -- | -- | 0.574 | -- | 40.3 | 2671 | -- | -- |
| 187.53 | 0.638 | 4.17 | -- | 0.842 | -1.31 | -- | -- | 0.059 | 5 | 54.81 | 47520 | -- | -- |
| 221.5 | 0.695 | 4.05 | 1.67 | -- | -- | -- | -- | 0.656 | -- | -- | -- | -- | -- |
| 254.1 | 0.746 | 4.08 | -- | 0.883 | -- | -- | -- | 0.451 | 4.84 | -- | -- | -- | -- |
| 224.73 | 0.698 | 4.18 | -- | -- | -1.35 | -- | -- | 0.0658 | -- | 39.85 | 47520 | -- | -- |
| 295.35 | 0.802 | 4.09 | -- | -- | -- | -- | -- | 0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.07 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 2 | 169.11 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 4 | 169.54 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 5 | 169.73 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 7 | 169.77 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 8 | 169.79 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 9 | 169.81 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 10 | 169.87 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 29 | 170.11 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 53 | 170.23 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 56 | 170.24 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 64 | 170.26 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 74 | 170.28 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 11 | NA |
| 83 | 170.30 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 118 | 170.36 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 16 | NA |
| 159 | 170.40 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 169 | 170.41 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 303 | 170.50 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 337 | 170.52 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 352 | 170.53 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 385 | 170.54 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 426 | 170.57 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 427 | 170.57 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 428 | 170.57 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 453 | 170.58 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 14 | NA |
| 484 | 170.59 | atmosphere | 1015 | 43200 | > th | dose dependent | no | NA | NA |
| 511 | 170.60 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 581 | 170.63 | wind | 9 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 582 | 170.63 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 624 | 170.65 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 683 | 170.67 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 22 |
| 698 | 170.68 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 746 | 170.70 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 769 | 170.71 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 770 | 170.71 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 775 | 170.71 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 8 | 12 |
| 799 | 170.72 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 804 | 170.72 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 824 | 170.73 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 834 | 170.73 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 862 | 170.75 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 912 | 170.77 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 926 | 170.77 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 929 | 170.78 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |