Os03g0194400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0194400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.75 | 0.247 | 8.2 | -0.594 | 0.342 | 0.557 | -0.437 | -0.0334 | -0.165 | 4.55 | 25.26 | 16 | -- | -- |
| 27.75 | 0.245 | 8.2 | -0.599 | 0.342 | 0.559 | -0.448 | -- | -0.166 | 4.54 | 25.25 | 16 | -- | -- |
| 28.17 | 0.247 | 8.19 | -0.559 | 0.348 | 0.551 | -- | -0.239 | -0.155 | 4.74 | 25.39 | 15 | -- | -- |
| 28.26 | 0.248 | 8.19 | -0.592 | 0.341 | 0.57 | -- | -- | -0.161 | 4.78 | 25.2 | 15 | -- | -- |
| 32.97 | 0.267 | 8.18 | -0.502 | -- | 0.72 | -- | -0.238 | -0.099 | -- | 27 | 41 | -- | -- |
| 32.45 | 0.267 | 8.22 | -0.733 | 0.429 | -- | -0.458 | -- | -0.28 | 3.88 | -- | -- | -- | -- |
| 33.05 | 0.269 | 8.22 | -0.727 | 0.427 | -- | -- | -- | -0.277 | 3.97 | -- | -- | -- | -- |
| 33.05 | 0.268 | 8.19 | -0.533 | -- | 0.736 | -- | -- | -0.111 | -- | 27 | 53 | -- | -- |
| 36.7 | 0.282 | 8.17 | -- | 0.306 | 0.8 | -- | -- | -0.0604 | 5.09 | 25 | 50 | -- | -- |
| 43.04 | 0.307 | 8.22 | -0.71 | -- | -- | -- | -- | -0.266 | -- | -- | -- | -- | -- |
| 46.99 | 0.321 | 8.2 | -- | 0.413 | -- | -- | -- | -0.196 | 4 | -- | -- | -- | -- |
| 40.12 | 0.295 | 8.17 | -- | -- | 0.903 | -- | -- | -0.0178 | -- | 26.97 | 73 | -- | -- |
| 56.32 | 0.35 | 8.21 | -- | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.43 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 2 | 26.47 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 6 |
| 7 | 26.53 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |
| 21 | 26.68 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 31 | 26.78 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 38 | 26.84 | temperature | 20 | 90 | > th | dose dependent | sin | 12 | NA |
| 39 | 26.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 81 | 26.99 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 12 |
| 82 | 26.99 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 15 |
| 184 | 27.33 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 1 |
| 278 | 27.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 282 | 27.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 284 | 27.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 285 | 27.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 13 |
| 288 | 27.65 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 289 | 27.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 309 | 27.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 318 | 27.70 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 325 | 27.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 330 | 27.71 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 22 |
| 362 | 27.75 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 375 | 27.77 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 388 | 27.78 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 398 | 27.79 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 410 | 27.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 418 | 27.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 424 | 27.81 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 20 |
| 425 | 27.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 426 | 27.81 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 431 | 27.82 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 556 | 27.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 671 | 28.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 12 |
| 732 | 28.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 782 | 28.21 | temperature | 25 | 10 | < th | dose independent | rect. | 3 | 23 |
| 828 | 28.27 | temperature | 30 | 90 | < th | dose dependent | sin | 12 | NA |
| 924 | 28.36 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 989 | 28.42 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 2 |