Os03g0193300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nitrate transporter.
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Os03g0193300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nitrate transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.78 | 0.409 | 6.04 | -1.58 | 0.27 | -0.967 | 0.39 | -0.879 | -0.019 | 0.805 | 22.6 | 2611 | -- | -- |
| 77.5 | 0.41 | 6.07 | -1.87 | 0.296 | -0.956 | 0.487 | -- | -0.0891 | 0.501 | 22.5 | 2695 | -- | -- |
| 76.41 | 0.407 | 6.04 | -1.57 | 0.27 | -0.964 | -- | -0.94 | -0.0121 | 0.829 | 22.6 | 2596 | -- | -- |
| 78.31 | 0.412 | 6.07 | -1.91 | 0.271 | -0.968 | -- | -- | -0.102 | 0.853 | 22.51 | 2605 | -- | -- |
| 80.27 | 0.417 | 6.04 | -1.52 | -- | -0.972 | -- | -0.99 | -0.0313 | -- | 22.98 | 2461 | -- | -- |
| 111.67 | 0.495 | 5.99 | -1.49 | 0.364 | -- | 0.502 | -- | 0.272 | 0.982 | -- | -- | -- | -- |
| 112.73 | 0.497 | 5.99 | -1.5 | 0.363 | -- | -- | -- | 0.269 | 1.02 | -- | -- | -- | -- |
| 81.52 | 0.421 | 6.07 | -1.91 | -- | -0.981 | -- | -- | -0.122 | -- | 23.7 | 2477 | -- | -- |
| 161.89 | 0.593 | 5.99 | -- | 0.33 | -0.48 | -- | -- | 0.27 | 0.886 | 22.82 | 1974 | -- | -- |
| 120.94 | 0.514 | 5.99 | -1.49 | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
| 172.34 | 0.614 | 5.95 | -- | 0.339 | -- | -- | -- | 0.437 | 0.84 | -- | -- | -- | -- |
| 165.41 | 0.599 | 5.99 | -- | -- | -0.52 | -- | -- | 0.262 | -- | 22.88 | 1012 | -- | -- |
| 179.51 | 0.625 | 5.95 | -- | -- | -- | -- | -- | 0.442 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.18 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 4 | 75.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 6 | 75.37 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 33 | 75.58 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 14 |
| 34 | 75.58 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 16 |
| 63 | 75.73 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 205 | 76.40 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 241 | 76.54 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 294 | 76.75 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 548 | 77.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 21 |
| 586 | 77.57 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 609 | 77.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 628 | 77.61 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 23 |
| 735 | 77.71 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 778 | 77.75 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 779 | 77.75 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 870 | 77.83 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 965 | 77.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 22 |