Os03g0191900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os03g0191900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 746.62 | 1.28 | 7.02 | -2.04 | 2.77 | 3.31 | 0.0453 | -2.6 | -0.82 | 13.1 | 4.974 | 339 | 14.4 | 19.2 |
| 750.05 | 1.28 | 7.01 | -1.79 | 2.8 | 3.31 | 0.955 | -- | -0.783 | 13.1 | 3.917 | 344 | 14.3 | 19.3 |
| 746.31 | 1.27 | 7.02 | -1.99 | 2.75 | 3.32 | -- | -2.41 | -0.813 | 13 | 4.947 | 343 | 14.3 | 19.3 |
| 753.29 | 1.28 | 7 | -1.74 | 2.81 | 3.35 | -- | -- | -0.769 | 13 | 4.155 | 348 | 14.2 | 19.4 |
| 831.69 | 1.34 | 7.04 | -2.17 | -- | 3.32 | -- | -1.53 | -0.894 | -- | -29.53 | 970 | 15.5 | 21.3 |
| 875.48 | 1.39 | 6.93 | -1.37 | 1.44 | -- | 0.748 | -- | -0.459 | 12.4 | -- | -- | -- | -- |
| 877.84 | 1.39 | 6.93 | -1.34 | 1.44 | -- | -- | -- | -0.456 | 12.4 | -- | -- | -- | -- |
| 829.68 | 1.34 | 7.04 | -1.91 | -- | 3.17 | -- | -- | -0.835 | -- | -29.02 | 965 | 15.6 | 21.2 |
| 831.57 | 1.34 | 6.95 | -- | 2.74 | 3.09 | -- | -- | -0.575 | 13 | 2.122 | 340 | 14.3 | 19.4 |
| 1008.5 | 1.48 | 6.96 | -1.39 | -- | -- | -- | -- | -0.479 | -- | -- | -- | -- | -- |
| 925.2 | 1.42 | 6.9 | -- | 1.46 | -- | -- | -- | -0.307 | 12.4 | -- | -- | -- | -- |
| 913.78 | 1.41 | 6.97 | -- | -- | 2.42 | -- | -- | -0.503 | -- | -58.16 | 976 | 15.5 | 21.1 |
| 1059.38 | 1.52 | 6.93 | -- | -- | -- | -- | -- | -0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 754.91 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 21 |
| 2 | 755.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 19 |
| 4 | 755.85 | temperature | 20.0 | 90 | > th | dose independent | rect. | 16 | 19 |
| 5 | 756.52 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 6 | 756.69 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 20 | 21 |
| 7 | 757.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 11 | 757.73 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 17 |
| 13 | 759.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 8 |
| 24 | 761.45 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 30 | 762.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 47 | 765.49 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 20 | 20 |
| 72 | 768.92 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 76 | 769.48 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 4 |
| 91 | 771.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 7 |
| 114 | 773.14 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 22 |
| 163 | 777.98 | wind | 7.0 | 30 | < th | dose independent | rect. | 20 | 22 |
| 166 | 778.29 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 4 |
| 171 | 778.52 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 18 | 15 |
| 176 | 778.76 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 2 |
| 186 | 779.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 189 | 780.17 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 18 | 2 |
| 190 | 780.23 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 21 |
| 196 | 780.80 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 18 | 2 |
| 197 | 780.83 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 22 |
| 204 | 781.21 | temperature | 15.0 | 30 | > th | dose independent | rect. | 20 | 22 |
| 233 | 782.42 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 239 | 782.70 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 18 | 16 |
| 247 | 783.09 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 20 |
| 256 | 783.47 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 265 | 783.87 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 275 | 784.13 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 18 | 2 |
| 276 | 784.13 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 18 | 2 |
| 291 | 784.86 | radiation | 10.0 | 90 | < th | dose independent | rect. | 20 | 21 |
| 309 | 785.47 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 315 | 785.76 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 20 | 14 |
| 325 | 786.19 | wind | 1.0 | 90 | > th | dose independent | rect. | 20 | 22 |
| 327 | 786.20 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 16 |
| 338 | 786.60 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 19 |
| 343 | 786.69 | wind | 1.0 | 30 | > th | dose independent | rect. | 18 | 2 |
| 348 | 786.88 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 20 | 14 |
| 349 | 786.89 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 351 | 786.94 | radiation | 10.0 | 30 | < th | dose independent | rect. | 18 | 2 |
| 352 | 786.98 | temperature | 10.0 | 30 | > th | dose independent | rect. | 18 | 2 |
| 354 | 786.98 | humidity | 50.0 | 30 | > th | dose independent | rect. | 18 | 2 |
| 355 | 786.98 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 18 | 2 |
| 370 | 787.17 | wind | 9.0 | 30 | < th | dose independent | rect. | 18 | 2 |
| 372 | 787.20 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 18 | 2 |
| 375 | 787.30 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 21 |
| 376 | 787.31 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 377 | 787.34 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 18 | 2 |
| 379 | 787.36 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 399 | 787.52 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 414 | 787.90 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 421 | 788.03 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 16 | 4 |
| 425 | 788.18 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 6 |
| 426 | 788.18 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 436 | 788.35 | wind | 9.0 | 90 | < th | dose dependent | rect. | 18 | 2 |
| 438 | 788.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 18 |
| 442 | 788.56 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 449 | 788.70 | temperature | 20.0 | 270 | > th | dose dependent | sin | 15 | NA |
| 468 | 788.93 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 23 | 17 |
| 471 | 788.98 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 6 |
| 475 | 789.07 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 478 | 789.16 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 4 |
| 479 | 789.16 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 4 |
| 487 | 789.34 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 14 |
| 489 | 789.35 | wind | 5.0 | 90 | < th | dose independent | rect. | 18 | 2 |
| 495 | 789.37 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 22 |
| 496 | 789.38 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 23 |
| 532 | 789.64 | wind | 3.0 | 43200 | > th | dose dependent | sin | 22 | NA |
| 537 | 789.73 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 4 |
| 538 | 789.73 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 551 | 789.85 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 577 | 790.14 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 8 | 9 |
| 585 | 790.21 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 15 |
| 607 | 790.39 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 608 | 790.40 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 18 |
| 610 | 790.40 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 612 | 790.44 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 614 | 790.46 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 18 |
| 630 | 790.60 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 20 | 20 |
| 632 | 790.62 | wind | 5.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 633 | 790.62 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 634 | 790.63 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 11 |
| 639 | 790.66 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 644 | 790.75 | wind | 5.0 | 43200 | < th | dose independent | rect. | 12 | 19 |
| 649 | 790.78 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 653 | 790.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 21 | 18 |
| 659 | 790.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 20 |
| 714 | 791.15 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 11 |
| 727 | 791.24 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 15 |
| 728 | 791.24 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 11 | 20 |
| 745 | 791.31 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 8 | 13 |
| 758 | 791.38 | humidity | 90.0 | 270 | < th | dose independent | rect. | 16 | 4 |
| 778 | 791.47 | wind | 5.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 781 | 791.47 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 9 |
| 796 | 791.55 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 816 | 791.63 | wind | 9.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 819 | 791.64 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 20 |
| 836 | 791.71 | wind | 5.0 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 848 | 791.74 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 852 | 791.75 | wind | 5.0 | 43200 | > th | dose independent | rect. | 12 | 19 |
| 865 | 791.80 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 890 | 791.90 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 896 | 791.92 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 14 |
| 900 | 791.93 | temperature | 30.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 932 | 792.00 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 946 | 792.05 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 955 | 792.08 | wind | 5.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 956 | 792.09 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 6 |
| 979 | 792.16 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 13 |