Os03g0191000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CG-1 protein (Fragment).
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Os03g0191000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CG-1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.07 | 0.205 | 10.8 | 0.239 | 0.589 | 0.429 | 0.259 | -0.606 | 0.251 | 4.73 | 9.248 | 4864 | -- | -- |
| 19.45 | 0.205 | 10.8 | 0.356 | 0.583 | 0.49 | 0.232 | -- | 0.261 | 4.63 | 10.48 | 5746 | -- | -- |
| 19.25 | 0.204 | 10.8 | 0.239 | 0.591 | 0.43 | -- | -0.601 | 0.25 | 4.76 | 9.452 | 4883 | -- | -- |
| 19.58 | 0.206 | 10.8 | 0.364 | 0.575 | 0.467 | -- | -- | 0.277 | 4.72 | 10.63 | 5699 | -- | -- |
| 36.52 | 0.281 | 10.8 | 0.262 | -- | 0.498 | -- | -0.475 | 0.259 | -- | 5.227 | 4129 | -- | -- |
| 23.07 | 0.225 | 10.8 | 0.588 | 0.589 | -- | 0.259 | -- | 0.378 | 4.63 | -- | -- | -- | -- |
| 23.25 | 0.226 | 10.8 | 0.587 | 0.591 | -- | -- | -- | 0.377 | 4.66 | -- | -- | -- | -- |
| 36.73 | 0.282 | 10.8 | 0.37 | -- | 0.521 | -- | -- | 0.289 | -- | 5.225 | 4126 | -- | -- |
| 21.08 | 0.214 | 10.8 | -- | 0.589 | 0.558 | -- | -- | 0.148 | 4.73 | 10.43 | 42320 | -- | -- |
| 41.78 | 0.302 | 10.8 | 0.609 | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
| 32.33 | 0.266 | 10.8 | -- | 0.601 | -- | -- | -- | 0.312 | 4.63 | -- | -- | -- | -- |
| 38.97 | 0.291 | 10.8 | -- | -- | 0.61 | -- | -- | 0.156 | -- | 8.303 | 22846 | -- | -- |
| 51.57 | 0.335 | 10.8 | -- | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 2 | 18.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 11 | 18.97 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 12 | 18.97 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 19 | 18.99 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 23 | 18.99 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 24 | 18.99 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 14 |
| 59 | 19.02 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 97 | 19.03 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 10 |
| 119 | 19.04 | temperature | 10 | 4320 | > th | dose dependent | sin | 3 | NA |
| 154 | 19.05 | temperature | 25 | 4320 | < th | dose dependent | sin | 3 | NA |
| 156 | 19.05 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 4 |
| 192 | 19.06 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 313 | 19.09 | temperature | 30 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 413 | 19.11 | radiation | 20 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 679 | 19.16 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 711 | 19.16 | temperature | 10 | 4320 | > th | dose dependent | rect. | 12 | 21 |
| 726 | 19.16 | temperature | 10 | 4320 | > th | dose dependent | rect. | 9 | 23 |
| 743 | 19.17 | radiation | 20 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 793 | 19.17 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 21 |
| 825 | 19.18 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 904 | 19.19 | temperature | 30 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 963 | 19.19 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 23 |
| 969 | 19.19 | temperature | 25 | 4320 | < th | dose dependent | rect. | 16 | 23 |
| 983 | 19.20 | temperature | 30 | 4320 | < th | dose dependent | rect. | 12 | 4 |