Os03g0190500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0190500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.84 | 0.325 | 2.78 | 0.0932 | 0.0174 | -0.393 | 0.261 | 0.444 | 0.016 | 4.4 | 9.205 | 1152 | -- | -- |
| 47.85 | 0.322 | 2.78 | 0.1 | 0.016 | -0.485 | 0.26 | -- | 0.0155 | 4.24 | 9.2 | 1152 | -- | -- |
| 48.01 | 0.323 | 2.77 | 0.0928 | 0.0246 | -0.371 | -- | 0.54 | 0.0166 | 6.97 | 9.213 | 1152 | -- | -- |
| 48.02 | 0.323 | 2.78 | 0.0882 | 0.0277 | -0.458 | -- | -- | 0.00944 | 7.54 | 9.2 | 1148 | -- | -- |
| 48.05 | 0.323 | 2.78 | 0.091 | -- | -0.39 | -- | 0.431 | 0.0149 | -- | 9.2 | 1148 | -- | -- |
| 49.65 | 0.33 | 2.78 | 0.0353 | 0.0247 | -- | 0.232 | -- | -0.0121 | 4.8 | -- | -- | -- | -- |
| 49.79 | 0.33 | 2.79 | 0.0344 | 0.0269 | -- | -- | -- | -0.0132 | 5.44 | -- | -- | -- | -- |
| 48.04 | 0.323 | 2.78 | 0.0996 | -- | -0.481 | -- | -- | 0.0144 | -- | 9.336 | 1149 | -- | -- |
| 48.25 | 0.324 | 2.78 | -- | 0.0264 | -0.443 | -- | -- | 0.000904 | 6.95 | 9.266 | 1152 | -- | -- |
| 49.83 | 0.33 | 2.79 | 0.0353 | -- | -- | -- | -- | -0.0125 | -- | -- | -- | -- | -- |
| 49.82 | 0.33 | 2.79 | -- | 0.0275 | -- | -- | -- | -0.017 | 5.39 | -- | -- | -- | -- |
| 48.29 | 0.324 | 2.78 | -- | -- | -0.438 | -- | -- | 0.00162 | -- | 9.309 | 1151 | -- | -- |
| 49.86 | 0.33 | 2.79 | -- | -- | -- | -- | -- | -0.0165 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.31 | wind | 7.0 | 10 | > th | dose independent | rect. | 19 | 1 |
| 3 | 42.31 | wind | 7.0 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 105 | 45.43 | wind | 3.0 | 30 | > th | dose independent | rect. | 5 | 2 |
| 117 | 45.51 | wind | 3.0 | 30 | > th | dose dependent | rect. | 5 | 2 |
| 118 | 45.56 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 119 | 45.57 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 4 | 3 |
| 120 | 45.57 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 4 | 4 |
| 166 | 45.59 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 4 | 2 |
| 173 | 45.59 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 285 | 45.93 | wind | 9.0 | 270 | > th | dose independent | rect. | 16 | 4 |
| 307 | 46.12 | wind | 9.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 309 | 46.13 | wind | 9.0 | 270 | > th | dose dependent | rect. | 16 | 4 |
| 322 | 46.21 | wind | 9.0 | 720 | > th | dose independent | rect. | 19 | 1 |
| 338 | 46.21 | wind | 9.0 | 720 | > th | dose dependent | rect. | 19 | 1 |
| 342 | 46.23 | wind | 9.0 | 270 | > th | dose independent | rect. | 16 | 10 |
| 357 | 46.33 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 376 | 46.40 | wind | 5.0 | 30 | > th | dose dependent | rect. | 19 | 11 |
| 382 | 46.45 | wind | 9.0 | 270 | > th | dose dependent | rect. | 16 | 10 |
| 491 | 46.92 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 19 |
| 494 | 46.92 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 516 | 46.96 | wind | 7.0 | 30 | > th | dose independent | sin | 11 | NA |
| 637 | 47.20 | precipitation | 0.1 | 10 | > th | dose independent | sin | 0 | NA |
| 640 | 47.20 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 0 | NA |
| 663 | 47.27 | temperature | 20.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 668 | 47.27 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 672 | 47.27 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 677 | 47.27 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 684 | 47.28 | wind | 9.0 | 270 | > th | dose independent | sin | 13 | NA |
| 693 | 47.28 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 14 | 6 |
| 706 | 47.30 | wind | 7.0 | 30 | < th | dose independent | sin | 12 | NA |
| 713 | 47.31 | wind | 3.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 715 | 47.31 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 726 | 47.33 | wind | 9.0 | 270 | < th | dose independent | sin | 13 | NA |
| 727 | 47.33 | precipitation | 0.1 | 10 | < th | dose independent | sin | 0 | NA |
| 728 | 47.33 | precipitation | 0.1 | 10 | < th | dose dependent | sin | 0 | NA |
| 813 | 47.48 | wind | 9.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 831 | 47.50 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 19 | 1 |
| 832 | 47.50 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 9 | 8 |