Os03g0189900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : VQ domain containing protein.
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Os03g0189900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : VQ domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.3 | 0.688 | 4.22 | 3.1 | 0.865 | -1.7 | -1.33 | 7.01 | 0.455 | 17.6 | 24.93 | 1832 | -- | -- |
| 223.18 | 0.696 | 4.38 | 1.7 | 0.677 | -1.16 | -1.2 | -- | 0.219 | 17.3 | 19.15 | 6146 | -- | -- |
| 217.81 | 0.687 | 4.22 | 3.18 | 0.895 | -1.82 | -- | 7.85 | 0.416 | 18.1 | 25.57 | 1917 | -- | -- |
| 226.45 | 0.701 | 4.39 | 1.63 | 0.679 | -1.11 | -- | -- | 0.196 | 17.8 | 20.1 | 6199 | -- | -- |
| 241.02 | 0.723 | 4.26 | 2.59 | -- | -1.3 | -- | 3.65 | 0.401 | -- | 22.73 | 2780 | -- | -- |
| 260.51 | 0.757 | 4.45 | 1.06 | 0.66 | -- | -1.26 | -- | -0.103 | 17.1 | -- | -- | -- | -- |
| 264.03 | 0.761 | 4.46 | 1.06 | 0.661 | -- | -- | -- | -0.11 | 17.6 | -- | -- | -- | -- |
| 247.37 | 0.733 | 4.35 | 1.75 | -- | -1.29 | -- | -- | 0.263 | -- | 16.9 | 7031 | -- | -- |
| 278.44 | 0.777 | 4.44 | -- | 0.671 | -0.618 | -- | -- | -0.0482 | 17.8 | 26.93 | 7663 | -- | -- |
| 286.74 | 0.791 | 4.45 | 1.04 | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
| 293.72 | 0.802 | 4.48 | -- | 0.644 | -- | -- | -- | -0.228 | 17.7 | -- | -- | -- | -- |
| 297.59 | 0.803 | 4.45 | -- | -- | -0.575 | -- | -- | -0.14 | -- | 27.15 | 7023 | -- | -- |
| 315.27 | 0.829 | 4.47 | -- | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 210.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 7 | 212.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 15 | 213.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 21 | 214.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 30 | 214.33 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 78 | 215.19 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 79 | 215.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 93 | 215.33 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 97 | 215.35 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 133 | 215.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 168 | 216.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 17 |
| 172 | 216.28 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 15 |
| 227 | 216.72 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 299 | 217.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 319 | 217.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 327 | 217.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 329 | 217.32 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 345 | 217.38 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 368 | 217.52 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 414 | 217.68 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 17 |
| 440 | 217.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 445 | 217.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 459 | 217.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 570 | 218.35 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 587 | 218.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 821 | 219.31 | temperature | 25 | 4320 | > th | dose independent | sin | 3 | NA |
| 863 | 219.55 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 867 | 219.56 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 882 | 219.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 883 | 219.63 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 15 |
| 892 | 219.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 899 | 219.69 | temperature | 25 | 4320 | < th | dose independent | sin | 2 | NA |
| 921 | 219.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 929 | 219.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 15 |
| 983 | 219.94 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |