Os03g0189100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0189100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.88 | 0.304 | 12 | 0.987 | 0.433 | 0.635 | -0.464 | 0.648 | 0.435 | 7.62 | 28.61 | 97 | -- | -- |
| 42.49 | 0.304 | 12 | 1.1 | 0.446 | 0.625 | -0.46 | -- | 0.458 | 7.56 | 28.63 | 81 | -- | -- |
| 42.42 | 0.303 | 12 | 0.976 | 0.45 | 0.61 | -- | 0.619 | 0.433 | 7.37 | 27.94 | 82 | -- | -- |
| 42.97 | 0.305 | 12 | 1.07 | 0.46 | 0.583 | -- | -- | 0.462 | 7.14 | 27.36 | 114 | -- | -- |
| 50.53 | 0.331 | 12 | 1.05 | -- | 0.789 | -- | 0.456 | 0.474 | -- | 28.68 | 254 | -- | -- |
| 47.73 | 0.324 | 12 | 0.929 | 0.544 | -- | -0.108 | -- | 0.333 | 6.17 | -- | -- | -- | -- |
| 47.76 | 0.324 | 12 | 0.928 | 0.543 | -- | -- | -- | 0.333 | 6.11 | -- | -- | -- | -- |
| 50.88 | 0.332 | 12 | 1.14 | -- | 0.803 | -- | -- | 0.501 | -- | 29 | 255 | -- | -- |
| 70.23 | 0.392 | 12 | -- | 0.541 | 0.117 | -- | -- | 0.252 | 6.24 | 27.36 | 114 | -- | -- |
| 63.06 | 0.371 | 12 | 0.943 | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
| 70.45 | 0.393 | 12 | -- | 0.557 | -- | -- | -- | 0.23 | 6.03 | -- | -- | -- | -- |
| 82.44 | 0.423 | 12 | -- | -- | 0.462 | -- | -- | 0.311 | -- | 30.63 | 254 | -- | -- |
| 86.53 | 0.434 | 12 | -- | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 8 | 41.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 17 |
| 22 | 41.45 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 17 |
| 23 | 41.45 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 43 | 41.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 50 | 41.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 65 | 41.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 24 | 12 |
| 82 | 41.89 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 13 |
| 92 | 41.94 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 97 | 41.97 | temperature | 25 | 720 | < th | dose independent | sin | 12 | NA |
| 115 | 42.01 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 119 | 42.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 127 | 42.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 140 | 42.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 148 | 42.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 150 | 42.13 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 151 | 42.13 | temperature | 25 | 270 | < th | dose independent | sin | 10 | NA |
| 171 | 42.18 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 22 |
| 177 | 42.20 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 193 | 42.26 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 10 |
| 200 | 42.27 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 208 | 42.29 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 222 | 42.31 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 237 | 42.34 | temperature | 25 | 270 | > th | dose independent | sin | 12 | NA |
| 245 | 42.36 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 2 |
| 251 | 42.36 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 21 |
| 252 | 42.36 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 260 | 42.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 270 | 42.40 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 281 | 42.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 13 |
| 282 | 42.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 19 |
| 289 | 42.44 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 23 |
| 300 | 42.46 | temperature | 20 | 90 | > th | dose dependent | sin | 7 | NA |
| 308 | 42.47 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 329 | 42.51 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 333 | 42.52 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 335 | 42.53 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 21 |
| 346 | 42.56 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 19 |
| 354 | 42.57 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 369 | 42.59 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 375 | 42.60 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 21 |
| 420 | 42.65 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 432 | 42.66 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 23 |
| 447 | 42.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 454 | 42.67 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 485 | 42.71 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 12 |
| 508 | 42.72 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 517 | 42.73 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 23 |
| 524 | 42.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 545 | 42.76 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 557 | 42.77 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 614 | 42.82 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 653 | 42.86 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 657 | 42.87 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 689 | 42.89 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 19 |
| 714 | 42.91 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 725 | 42.92 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 733 | 42.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 17 |
| 739 | 42.93 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 12 |
| 746 | 42.93 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 755 | 42.93 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 780 | 42.95 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 10 |
| 847 | 42.98 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 907 | 43.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 936 | 43.04 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 947 | 43.05 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 23 |
| 953 | 43.05 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 13 |
| 966 | 43.06 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 23 |