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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0188500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutelin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.51 (0.0394) R2 : 0.209
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.914 (0.107) R2dE : 0.13 R2E : 0.0844
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.621 (0.0832) R2dN8 : 0.124 R2N8 : 0.079
σ : 0.74
deviance : 252.45
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_____
C
peak time of C : --
E
wheather : wind
threshold : 5.6
memory length : 243
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.73
open length of G : 18.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
246.39 0.737 8.51 0.0324 0.0248 -0.915 0.94 1.04 -0.615 15.6 5.672 245 8.82 18.2
247.83 0.733 8.52 0.0689 0.121 -0.976 1.32 -- -0.643 17.4 5.628 240 8.87 18.2
248.66 0.734 8.5 0.0234 0.086 -0.912 -- 1.19 -0.63 17.2 5.6 240 8.67 18.3
251.26 0.738 8.52 0.0972 0.161 -1 -- -- -0.616 20.3 5.6 241 8.9 18.1
248.89 0.735 8.5 0.0393 -- -0.896 -- 1.16 -0.626 -- 5.7 240 8.58 18.4
281.22 0.786 8.5 -0.0879 0.447 -- -0.461 -- -0.578 8.67 -- -- -- --
281.85 0.786 8.5 -0.101 0.446 -- -- -- -0.577 8.97 -- -- -- --
252.35 0.74 8.51 0.0686 -- -0.917 -- -- -0.616 -- 5.6 243 8.75 18.3
251.34 0.738 8.52 -- 0.167 -1.01 -- -- -0.622 19.8 5.693 244 8.83 18.1
293.26 0.8 8.51 -0.102 -- -- -- -- -0.574 -- -- -- -- --
282.12 0.786 8.49 -- 0.446 -- -- -- -0.566 8.99 -- -- -- --
252.45 0.74 8.51 -- -- -0.914 -- -- -0.621 -- 5.6 243 8.73 18.4
293.53 0.8 8.51 -- -- -- -- -- -0.563 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.48 wind 5.0 270 < th dose independent rect. 9 18
2 248.48 wind 9.0 270 < th dose dependent rect. 8 19
3 248.53 atmosphere 995.0 10 > th dose dependent rect. 5 15
5 248.73 wind 7.0 10 < th dose independent rect. 9 20
8 249.02 temperature 25.0 30 > th dose independent rect. 9 7
10 249.21 atmosphere 1010.0 90 < th dose independent rect. 9 7
13 249.32 temperature 30.0 10 < th dose dependent rect. 5 15
18 249.51 temperature 25.0 30 > th dose independent rect. 9 9
22 249.84 temperature 10.0 270 > th dose dependent rect. 7 7
25 250.02 temperature 25.0 10 < th dose independent rect. 5 15
30 250.11 temperature 10.0 90 > th dose dependent rect. 9 7
34 250.36 temperature 15.0 10 > th dose dependent rect. 9 7
41 250.84 temperature 25.0 270 > th dose independent rect. 23 15
51 251.21 temperature 25.0 270 < th dose independent rect. 2 10
61 251.45 atmosphere 1010.0 10 < th dose independent rect. 9 20
67 251.57 temperature 25.0 270 < th dose independent rect. 2 17
83 251.82 wind 1.0 270 > th dose dependent rect. 14 9
86 251.96 wind 9.0 10 < th dose dependent rect. 9 20
93 252.09 atmosphere 1010.0 90 < th dose independent rect. 9 19
97 252.16 wind 7.0 10 < th dose independent rect. 20 9
119 252.63 wind 9.0 10 < th dose dependent rect. 20 9
123 252.70 atmosphere 1015.0 90 < th dose dependent rect. 9 7
124 252.73 temperature 10.0 10 > th dose dependent rect. 9 20
131 252.83 radiation 1.0 270 > th dose independent rect. 7 8
135 252.86 wind 1.0 270 > th dose dependent rect. 14 17
140 252.92 temperature 10.0 270 > th dose dependent rect. 22 15
148 253.01 atmosphere 1000.0 10 > th dose independent rect. 5 15
150 253.04 atmosphere 1015.0 10 < th dose dependent rect. 9 7
154 253.13 wind 7.0 270 < th dose independent rect. 19 8
168 253.28 wind 7.0 90 < th dose independent rect. 9 8
170 253.30 humidity 50.0 90 > th dose independent rect. 9 7
182 253.46 humidity 50.0 270 > th dose independent rect. 7 8
200 253.76 atmosphere 995.0 10 > th dose dependent rect. 5 18
238 254.27 wind 1.0 270 > th dose independent rect. 15 16
242 254.32 wind 7.0 270 < th dose independent rect. 7 8
243 254.32 atmosphere 1010.0 30 < th dose independent rect. 20 20
246 254.34 wind 9.0 90 < th dose dependent rect. 9 8
247 254.34 radiation 1.0 10 < th dose dependent rect. 20 10
256 254.49 temperature 25.0 270 < th dose independent sin 5 NA
257 254.53 wind 9.0 270 < th dose dependent rect. 19 8
261 254.57 radiation 1.0 10 < th dose dependent rect. 20 12
301 254.91 temperature 10.0 90 > th dose dependent rect. 9 19
305 254.99 wind 1.0 270 > th dose independent rect. 3 16
312 255.04 atmosphere 1010.0 10 < th dose independent rect. 23 17
390 255.57 humidity 50.0 10 > th dose dependent rect. 20 9
418 255.74 temperature 15.0 270 > th dose independent rect. 7 8
422 255.76 radiation 1.0 10 > th dose independent rect. 9 9
429 255.83 temperature 30.0 10 < th dose dependent rect. 5 9
446 255.96 radiation 1.0 270 < th dose independent rect. 4 11
458 256.01 temperature 10.0 10 > th dose independent rect. 20 9
459 256.01 temperature 30.0 10 < th dose independent rect. 20 9
460 256.01 humidity 50.0 10 > th dose independent rect. 20 9
463 256.01 atmosphere 995.0 10 > th dose independent rect. 20 9
464 256.01 radiation 1.0 10 < th dose independent rect. 20 9
469 256.01 temperature 10.0 10 > th dose independent rect. 5 15
471 256.01 atmosphere 1015.0 10 < th dose independent rect. 5 15
472 256.01 wind 7.0 270 < th dose independent rect. 17 23
473 256.01 radiation 30.0 10 < th dose dependent rect. 20 9
482 256.04 atmosphere 1010.0 270 < th dose independent rect. 20 18
531 256.30 temperature 30.0 10 < th dose dependent rect. 5 7
556 256.49 temperature 30.0 270 < th dose dependent rect. 2 7
577 256.59 atmosphere 1000.0 10 > th dose independent rect. 5 18
589 256.70 radiation 1.0 270 < th dose independent rect. 3 16
604 256.79 wind 3.0 270 > th dose dependent rect. 15 4
605 256.80 wind 7.0 10 < th dose independent rect. 9 9
607 256.80 humidity 50.0 10 > th dose independent rect. 9 20
621 256.86 wind 9.0 10 < th dose dependent rect. 12 17
622 256.87 temperature 10.0 270 > th dose independent rect. 19 8
623 256.87 temperature 30.0 270 < th dose independent rect. 19 8
624 256.87 humidity 50.0 270 > th dose independent rect. 19 8
625 256.87 atmosphere 995.0 270 > th dose independent rect. 19 8
626 256.87 radiation 1.0 270 < th dose independent rect. 19 8
631 256.87 temperature 10.0 270 > th dose independent rect. 3 16
632 256.87 atmosphere 1015.0 270 < th dose independent rect. 3 16
633 256.87 radiation 1.0 270 < th dose dependent rect. 19 8
644 256.90 temperature 15.0 10 > th dose dependent rect. 23 17
653 256.95 atmosphere 995.0 90 > th dose independent rect. 9 8
657 256.96 precipitation 0.1 10 < th dose independent rect. 5 15
659 256.96 precipitation 0.1 10 < th dose dependent rect. 5 15
661 256.97 atmosphere 995.0 270 > th dose independent rect. 7 8
671 256.99 radiation 1.0 270 < th dose dependent rect. 4 11
682 257.02 temperature 15.0 90 > th dose independent rect. 9 7
683 257.02 radiation 1.0 10 < th dose dependent sin 9 NA
696 257.05 humidity 50.0 1440 > th dose independent rect. 18 16
720 257.15 precipitation 0.1 10 < th dose independent rect. 20 9
722 257.15 precipitation 0.1 10 < th dose dependent rect. 20 9
726 257.17 temperature 25.0 270 > th dose independent sin 5 NA
733 257.18 radiation 1.0 10 > th dose independent rect. 9 7
756 257.24 precipitation 0.1 270 < th dose independent rect. 19 8
759 257.24 precipitation 0.1 270 < th dose dependent rect. 19 8
772 257.31 atmosphere 995.0 270 > th dose dependent rect. 2 7
789 257.40 temperature 30.0 90 < th dose dependent rect. 4 9
810 257.44 radiation 1.0 10 < th dose independent rect. 20 12
815 257.45 precipitation 0.1 270 < th dose independent rect. 7 8
816 257.45 precipitation 0.1 270 < th dose dependent rect. 7 8
835 257.54 humidity 90.0 90 < th dose independent rect. 9 7
839 257.55 radiation 40.0 270 < th dose independent rect. 15 16
857 257.60 temperature 10.0 270 > th dose independent rect. 15 16
858 257.60 wind 9.0 90 < th dose dependent sin 15 NA
881 257.69 atmosphere 1000.0 10 > th dose dependent rect. 5 7
889 257.72 atmosphere 995.0 10 > th dose independent rect. 9 20
907 257.79 radiation 1.0 270 > th dose independent rect. 4 11
940 257.86 atmosphere 995.0 10 > th dose dependent rect. 5 4
943 257.88 wind 5.0 270 > th dose independent rect. 15 4
944 257.88 precipitation 0.1 270 < th dose independent rect. 3 16
945 257.88 precipitation 0.1 270 < th dose dependent rect. 3 16
951 257.90 wind 1.0 270 > th dose dependent sin 18 NA
967 257.98 humidity 50.0 1440 > th dose independent rect. 5 5