Os03g0187700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Target SNARE coiled-coil region domain containing protein.
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Os03g0187700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Target SNARE coiled-coil region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.14 | 0.245 | 11.3 | -0.0779 | 0.282 | 0.224 | -0.23 | 0.461 | 0.0616 | 1.82 | 24.92 | 252 | -- | -- |
| 27.71 | 0.245 | 11.2 | 0.0663 | 0.281 | 0.248 | -0.106 | -- | 0.108 | 1.68 | 24.98 | 252 | -- | -- |
| 27.32 | 0.243 | 11.2 | -0.0585 | 0.289 | 0.219 | -- | 0.396 | 0.0623 | 1.9 | 24.9 | 254 | -- | -- |
| 27.75 | 0.245 | 11.2 | 0.0665 | 0.281 | 0.246 | -- | -- | 0.11 | 1.75 | 24.98 | 254 | -- | -- |
| 29.03 | 0.251 | 11.3 | 0.0445 | -- | 0.367 | -- | 0.334 | 0.0408 | -- | 27.13 | 155 | -- | -- |
| 30.78 | 0.26 | 11.3 | -0.00584 | 0.413 | -- | 0.0259 | -- | -0.0108 | 2.89 | -- | -- | -- | -- |
| 30.78 | 0.26 | 11.3 | -0.00643 | 0.413 | -- | -- | -- | -0.0109 | 2.88 | -- | -- | -- | -- |
| 29.25 | 0.252 | 11.2 | 0.108 | -- | 0.384 | -- | -- | 0.0581 | -- | 27.25 | 156 | -- | -- |
| 27.86 | 0.246 | 11.2 | -- | 0.289 | 0.237 | -- | -- | 0.0978 | 1.8 | 24.98 | 262 | -- | -- |
| 40.64 | 0.298 | 11.3 | 0.0112 | -- | -- | -- | -- | -0.000268 | -- | -- | -- | -- | -- |
| 30.78 | 0.26 | 11.3 | -- | 0.413 | -- | -- | -- | -0.0102 | 2.88 | -- | -- | -- | -- |
| 29.54 | 0.253 | 11.3 | -- | -- | 0.364 | -- | -- | 0.0409 | -- | 27.2 | 155 | -- | -- |
| 40.64 | 0.298 | 11.3 | -- | -- | -- | -- | -- | -0.00151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 5 | 23.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 8 | 24.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 11 | 24.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 18 | 24.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 8 |
| 24 | 24.41 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 8 |
| 26 | 24.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 35 | 24.52 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 15 |
| 39 | 24.55 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 52 | 24.63 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 75 | 24.76 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 81 | 24.80 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 83 | 24.81 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 15 |
| 108 | 24.91 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 157 | 25.07 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 202 | 25.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 230 | 25.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 241 | 25.28 | temperature | 25 | 90 | > th | dose dependent | sin | 4 | NA |
| 247 | 25.29 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 320 | 25.41 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 20 |
| 378 | 25.51 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 7 |
| 405 | 25.55 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 488 | 25.66 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 8 |
| 579 | 25.80 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 8 |
| 646 | 25.89 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 17 |
| 691 | 25.95 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 15 |
| 747 | 26.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 809 | 26.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 919 | 26.19 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 15 |
| 929 | 26.20 | temperature | 25 | 10 | < th | dose independent | rect. | 6 | 13 |