Os03g0187200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0187200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.21 | 0.506 | 8.35 | -0.186 | 0.598 | -8.91 | -0.784 | -26 | -0.249 | 7.61 | 9.451 | 11 | -- | -- |
| 122.74 | 0.516 | 8.4 | 0.0239 | 0.58 | -2.69 | -0.806 | -- | -0.198 | 7.71 | 9.408 | 11 | -- | -- |
| 117.39 | 0.505 | 8.36 | -0.203 | 0.603 | -9.05 | -- | -26.4 | -0.254 | 7.59 | 9.499 | 11 | -- | -- |
| 123.7 | 0.518 | 8.4 | -0.0723 | 0.575 | -2.45 | -- | -- | -0.241 | 7.86 | 9.321 | 11 | -- | -- |
| 136.18 | 0.544 | 8.37 | -0.202 | -- | -9.55 | -- | -27.7 | -0.248 | -- | 9.519 | 11 | -- | -- |
| 136.09 | 0.547 | 8.4 | 0.0482 | 0.624 | -- | -0.936 | -- | -0.226 | 7.34 | -- | -- | -- | -- |
| 138.46 | 0.551 | 8.4 | 0.0277 | 0.622 | -- | -- | -- | -0.224 | 7.37 | -- | -- | -- | -- |
| 142.3 | 0.556 | 8.42 | -0.0675 | -- | -2.6 | -- | -- | -0.253 | -- | 9.393 | 10 | -- | -- |
| 123.77 | 0.518 | 8.4 | -- | 0.592 | -2.4 | -- | -- | -0.244 | 7.75 | 9.348 | 11 | -- | -- |
| 159.05 | 0.589 | 8.41 | 0.038 | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
| 138.48 | 0.55 | 8.4 | -- | 0.622 | -- | -- | -- | -0.227 | 7.36 | -- | -- | -- | -- |
| 142.42 | 0.556 | 8.42 | -- | -- | -2.59 | -- | -- | -0.249 | -- | 9.4 | 10 | -- | -- |
| 159.08 | 0.589 | 8.41 | -- | -- | -- | -- | -- | -0.218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.50 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 20 | 15 |
| 2 | 113.63 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 6 | 113.67 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 23 | 12 |
| 13 | 113.72 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 16 | 113.90 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 28 | 114.02 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 53 | 114.13 | humidity | 70.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 54 | 114.17 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 56 | 114.18 | humidity | 70.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 61 | 114.28 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 64 | 114.32 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 69 | 114.38 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 7 | 5 |
| 90 | 114.55 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 20 | 18 |
| 209 | 115.17 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 6 | NA |
| 312 | 115.57 | wind | 9.0 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 357 | 115.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 364 | 115.77 | humidity | 60.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 388 | 115.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 390 | 115.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 398 | 115.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 530 | 116.29 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 8 | 13 |
| 542 | 116.30 | humidity | 70.0 | 14400 | < th | dose dependent | no | NA | NA |
| 667 | 116.40 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 679 | 116.45 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 706 | 116.53 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 743 | 116.58 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 831 | 116.63 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 873 | 116.65 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 937 | 116.76 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 967 | 116.80 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |