Os03g0186900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Radc1.
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Os03g0186900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Radc1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 153.54 | 0.582 | 3.34 | -0.298 | 0.43 | -1.38 | 0.461 | 4.61 | 0.137 | 18.4 | 29.7 | 274 | -- | -- |
| 156.57 | 0.583 | 3.29 | 0.157 | 0.427 | -0.912 | 0.171 | -- | 0.156 | 18.6 | 29.5 | 258 | -- | -- |
| 153.56 | 0.577 | 3.33 | -0.264 | 0.381 | -1.34 | -- | 3.96 | 0.11 | 18.4 | 29.5 | 289 | -- | -- |
| 156.6 | 0.583 | 3.29 | 0.157 | 0.426 | -0.92 | -- | -- | 0.171 | 18.5 | 29.4 | 259 | -- | -- |
| 159.56 | 0.588 | 3.33 | -0.336 | -- | -1.59 | -- | 4.19 | 0.0996 | -- | 29.59 | 291 | -- | -- |
| 178.32 | 0.626 | 3.29 | 0.307 | 0.826 | -- | 0.632 | -- | 0.206 | 17.7 | -- | -- | -- | -- |
| 179.29 | 0.627 | 3.29 | 0.304 | 0.829 | -- | -- | -- | 0.208 | 17.6 | -- | -- | -- | -- |
| 163.23 | 0.595 | 3.29 | 0.106 | -- | -1.15 | -- | -- | 0.129 | -- | 29.2 | 308 | -- | -- |
| 157.23 | 0.584 | 3.29 | -- | 0.414 | -0.947 | -- | -- | 0.153 | 18.5 | 29.4 | 259 | -- | -- |
| 215.02 | 0.685 | 3.27 | 0.277 | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
| 181.72 | 0.631 | 3.29 | -- | 0.825 | -- | -- | -- | 0.175 | 17.6 | -- | -- | -- | -- |
| 163.53 | 0.596 | 3.29 | -- | -- | -1.16 | -- | -- | 0.119 | -- | 29.2 | 311 | -- | -- |
| 217.04 | 0.688 | 3.28 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.11 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 5 |
| 3 | 141.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 13 | 143.49 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 2 |
| 28 | 145.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 11 |
| 33 | 145.45 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 37 | 145.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 9 |
| 70 | 146.88 | radiation | 1 | 10 | > th | dose independent | rect. | 14 | 5 |
| 113 | 147.94 | radiation | 1 | 30 | < th | dose independent | sin | 16 | NA |
| 118 | 148.21 | radiation | 1 | 10 | > th | dose independent | sin | 15 | NA |
| 120 | 148.28 | radiation | 1 | 10 | < th | dose dependent | sin | 16 | NA |
| 137 | 148.50 | wind | 3 | 270 | > th | dose independent | rect. | 13 | 2 |
| 144 | 148.60 | humidity | 70 | 90 | < th | dose independent | rect. | 13 | 6 |
| 176 | 149.27 | humidity | 80 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 180 | 149.29 | wind | 1 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 210 | 149.81 | wind | 3 | 270 | > th | dose independent | rect. | 11 | 5 |
| 248 | 150.27 | humidity | 80 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 277 | 150.62 | humidity | 80 | 90 | < th | dose dependent | rect. | 13 | 11 |
| 293 | 150.78 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 20 |
| 296 | 150.80 | humidity | 80 | 10 | < th | dose dependent | rect. | 14 | 17 |
| 321 | 151.25 | humidity | 80 | 10 | < th | dose dependent | rect. | 14 | 11 |
| 368 | 151.67 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 1 |
| 391 | 151.83 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 8 |
| 439 | 152.12 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 15 |
| 449 | 152.18 | radiation | 1 | 10 | < th | dose independent | rect. | 11 | 15 |
| 459 | 152.25 | radiation | 40 | 90 | < th | dose dependent | sin | 14 | NA |
| 476 | 152.28 | radiation | 1 | 10 | < th | dose independent | rect. | 13 | 13 |
| 487 | 152.37 | radiation | 1 | 10 | < th | dose dependent | rect. | 11 | 15 |
| 492 | 152.38 | radiation | 1 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 501 | 152.46 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 13 |
| 505 | 152.49 | temperature | 30 | 30 | < th | dose independent | rect. | 17 | 9 |
| 516 | 152.60 | humidity | 50 | 270 | > th | dose independent | rect. | 15 | 21 |
| 517 | 152.61 | radiation | 1 | 10 | < th | dose independent | rect. | 15 | 11 |
| 537 | 152.77 | temperature | 25 | 30 | > th | dose dependent | sin | 16 | NA |
| 539 | 152.79 | radiation | 1 | 10 | < th | dose dependent | rect. | 15 | 11 |
| 541 | 152.81 | temperature | 30 | 90 | > th | dose independent | sin | 16 | NA |
| 542 | 152.81 | radiation | 1 | 90 | > th | dose dependent | sin | 14 | NA |
| 556 | 152.91 | radiation | 1 | 10 | < th | dose independent | rect. | 6 | 20 |
| 566 | 153.01 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 569 | 153.05 | wind | 1 | 270 | > th | dose dependent | rect. | 11 | 5 |
| 585 | 153.20 | temperature | 30 | 90 | < th | dose independent | sin | 17 | NA |
| 598 | 153.30 | humidity | 80 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 801 | 154.00 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 2 |
| 837 | 154.10 | radiation | 40 | 270 | > th | dose independent | sin | 14 | NA |
| 899 | 154.36 | humidity | 70 | 90 | > th | dose independent | sin | 16 | NA |
| 956 | 154.60 | temperature | 30 | 270 | < th | dose independent | sin | 20 | NA |
| 960 | 154.63 | radiation | 30 | 270 | > th | dose dependent | sin | 14 | NA |