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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0185800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.19 (0.0275) R2 : 0.666
β1 : 1.23 (0.1) R2dD : 0.122 R2D : 0.0336
β2 : 1.81 (0.0664) R2dC : 0.615 R2C : 0.399
β3 : -1.96 (0.134) R2dE : 0.218 R2E : -0.16
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.658 (0.0645) R2dN8 : 0.133 R2N8 : -0.0601
σ : 0.499
deviance : 114.92
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_____
C
peak time of C : 23.6
E
wheather : radiation
threshold : 1.44
memory length : 8433
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
115.91 0.506 5.21 1.2 1.75 -2.01 -0.26 -0.779 0.595 23.7 0.9203 8496 -- --
117.46 0.505 5.21 1.51 1.75 -2.01 -0.26 -- 0.595 23.7 0.9203 8496 -- --
115.3 0.5 5.2 1.15 1.79 -2 -- -0.758 0.62 23.7 1.15 8462 -- --
114.92 0.499 5.19 1.23 1.81 -1.96 -- -- 0.658 23.6 1.44 8433 -- --
185.28 0.637 5.24 0.971 -- -1.09 -- 0.462 0.267 -- 0.9995 19085 -- --
168.55 0.609 5.28 0.887 1.54 -- -0.4 -- 0.224 23.9 -- -- -- --
169.25 0.609 5.28 0.903 1.54 -- -- -- 0.226 23.9 -- -- -- --
185.86 0.638 5.24 0.961 -- -1.09 -- -- 0.273 -- 1.17 19014 -- --
150.17 0.571 5.21 -- 1.9 -1.82 -- -- 0.561 23.4 1.825 8320 -- --
318.81 0.834 5.24 0.949 -- -- -- -- 0.246 -- -- -- -- --
190.75 0.646 5.3 -- 1.55 -- -- -- 0.125 23.9 -- -- -- --
210.22 0.677 5.26 -- -- -1.09 -- -- 0.167 -- 1.17 19014 -- --
342.59 0.864 5.27 -- -- -- -- -- 0.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 114.42 radiation 1 14400 > th dose independent rect. 4 8
11 114.43 radiation 1 14400 < th dose independent rect. 24 12
13 114.44 radiation 1 14400 < th dose independent rect. 4 8
17 114.44 radiation 1 14400 < th dose independent rect. 19 17
43 114.51 radiation 1 14400 < th dose independent rect. 4 5
47 114.52 radiation 1 14400 > th dose independent rect. 4 5
65 114.69 radiation 1 14400 < th dose independent sin 8 NA
89 114.73 radiation 1 14400 > th dose independent sin 7 NA
122 115.10 humidity 80 43200 > th dose dependent rect. 8 2
172 115.56 radiation 1 4320 > th dose dependent rect. 5 1
211 115.77 radiation 1 14400 > th dose independent rect. 17 18
218 115.85 humidity 60 43200 > th dose independent rect. 13 21
277 116.29 humidity 60 43200 > th dose independent rect. 14 18
279 116.30 humidity 60 43200 < th dose independent rect. 13 21
288 116.37 humidity 60 43200 > th dose independent sin 15 NA
295 116.37 radiation 1 14400 < th dose independent rect. 19 23
350 116.56 humidity 70 43200 < th dose independent rect. 17 8
351 116.56 wind 9 43200 > th dose dependent rect. 18 2
367 116.62 humidity 70 43200 < th dose dependent rect. 15 9
383 116.69 humidity 60 43200 < th dose independent rect. 14 16
391 116.71 humidity 80 43200 > th dose independent rect. 9 2
395 116.72 humidity 60 43200 < th dose independent sin 15 NA
398 116.72 humidity 70 43200 < th dose dependent rect. 17 2
401 116.75 humidity 60 43200 < th dose independent rect. 14 13
403 116.76 humidity 60 43200 < th dose independent rect. 14 11
407 116.78 humidity 70 43200 < th dose dependent rect. 16 5
420 116.84 humidity 60 43200 > th dose independent rect. 19 22
423 116.85 humidity 60 43200 > th dose independent rect. 2 22
425 116.86 radiation 1 14400 < th dose independent rect. 4 17
432 116.87 radiation 1 14400 < th dose independent no NA NA
449 116.87 radiation 1 14400 < th dose independent rect. 4 21
489 116.90 humidity 60 43200 > th dose independent no NA NA
494 116.91 humidity 70 43200 < th dose independent rect. 18 4
503 116.93 humidity 70 43200 < th dose independent rect. 17 17
504 116.93 humidity 60 43200 > th dose independent rect. 6 23
511 116.95 radiation 1 14400 > th dose independent no NA NA
564 116.96 radiation 1 14400 < th dose independent rect. 10 23
607 117.03 radiation 1 14400 > th dose independent rect. 10 23
624 117.06 humidity 80 43200 < th dose independent rect. 10 1
665 117.16 humidity 70 43200 < th dose independent rect. 17 14
675 117.17 humidity 70 43200 < th dose dependent rect. 13 21
686 117.18 humidity 70 43200 < th dose dependent sin 16 NA
704 117.22 radiation 1 14400 > th dose independent rect. 7 23
706 117.22 radiation 1 14400 < th dose independent rect. 7 23
750 117.31 wind 9 43200 > th dose independent rect. 18 2
787 117.42 radiation 40 4320 < th dose dependent rect. 1 5
809 117.48 humidity 70 43200 < th dose dependent rect. 7 12
832 117.53 wind 9 43200 < th dose independent rect. 18 2
838 117.54 humidity 70 43200 > th dose independent rect. 17 17
855 117.57 humidity 60 43200 < th dose independent rect. 4 20
910 117.64 humidity 60 43200 < th dose independent rect. 20 22
914 117.65 humidity 90 43200 < th dose independent rect. 6 3
956 117.70 humidity 60 43200 < th dose independent rect. 7 23
958 117.71 humidity 60 43200 < th dose independent no NA NA
966 117.72 humidity 70 43200 > th dose independent rect. 17 8