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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0185700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0245) R2 : 0.331
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.53 (0.169) R2dE : 0.334 R2E : 0.331
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0132 (0.0528) R2dN8 : 0.00023 R2N8 : -0.00257
σ : 0.458
deviance : 96.54
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_____
C
peak time of C : --
E
wheather : wind
threshold : 2.818
memory length : 15
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.01
open length of G : 1.39

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.7 0.44 3.31 0.271 0.165 2.16 0.819 -4.28 0.0184 10.8 2.719 30 2.02 1.01
88.7 0.439 3.31 0.274 0.164 2.64 0.82 -- 0.0177 10.8 2.7 30 2.02 1.01
90.49 0.443 3.3 0.295 0.161 2.17 -- -4.57 0.0215 10.7 2.9 30 2.02 1
91.25 0.445 3.31 0.361 0.153 2.52 -- -- 0.0126 10.6 2.883 27 2.02 0.783
92.09 0.447 3.31 0.296 -- 2.15 -- -4.32 0.021 -- 2.815 29 2.01 0.995
134.37 0.543 3.27 0.339 0.0785 -- 0.923 -- 0.207 10.9 -- -- -- --
136.46 0.547 3.27 0.371 0.188 -- -- -- 0.206 6.59 -- -- -- --
92.95 0.449 3.31 0.375 -- 2.47 -- -- 0.0283 -- 2.819 22 2.02 0.933
94.9 0.454 3.31 -- 0.153 2.52 -- -- 0.0122 10.6 2.846 27 2.02 0.75
138.3 0.55 3.27 0.375 -- -- -- -- 0.21 -- -- -- -- --
140.08 0.554 3.28 -- 0.192 -- -- -- 0.165 6.48 -- -- -- --
96.54 0.458 3.32 -- -- 2.53 -- -- -0.0132 -- 2.818 15 2.01 1.39
142.01 0.556 3.28 -- -- -- -- -- 0.168 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.74 wind 3.0 10 < th dose dependent rect. 2 1
2 87.77 wind 3.0 30 < th dose independent rect. 2 1
7 87.80 atmosphere 1015.0 30 < th dose dependent rect. 2 1
11 87.81 temperature 20.0 30 > th dose dependent rect. 2 1
12 87.82 humidity 90.0 30 > th dose independent rect. 2 1
16 87.85 humidity 50.0 30 > th dose dependent rect. 2 1
22 87.86 temperature 10.0 30 > th dose independent rect. 2 1
24 87.86 temperature 30.0 30 < th dose independent rect. 2 1
25 87.86 humidity 50.0 30 > th dose independent rect. 2 1
28 87.86 atmosphere 995.0 30 > th dose independent rect. 2 1
29 87.86 atmosphere 1010.0 30 < th dose independent rect. 2 1
31 87.86 radiation 1.0 30 < th dose independent rect. 2 1
36 87.86 precipitation 0.1 30 < th dose independent rect. 2 1
37 87.86 temperature 10.0 30 > th dose independent rect. 3 23
38 87.86 radiation 1.0 30 < th dose dependent rect. 2 1
43 87.86 precipitation 0.1 30 < th dose dependent rect. 2 1
45 87.87 atmosphere 1005.0 30 > th dose dependent rect. 2 1
49 87.91 atmosphere 995.0 30 > th dose dependent rect. 2 1
53 87.94 atmosphere 1005.0 30 > th dose independent rect. 2 1
58 88.02 temperature 30.0 30 < th dose dependent rect. 2 1
62 88.09 atmosphere 995.0 30 > th dose independent rect. 3 23
68 88.23 wind 1.0 30 > th dose independent rect. 2 1
101 88.53 radiation 1.0 43200 < th dose dependent rect. 3 1
102 88.63 precipitation 0.1 30 < th dose independent rect. 3 23
103 88.63 precipitation 0.1 30 < th dose dependent rect. 3 23
119 89.86 wind 9.0 1440 < th dose independent rect. 3 1
120 89.86 temperature 10.0 1440 > th dose independent rect. 3 1
123 89.86 temperature 30.0 1440 < th dose independent rect. 3 1
127 89.86 humidity 50.0 1440 > th dose independent rect. 3 1
136 89.86 atmosphere 995.0 1440 > th dose independent rect. 3 1
137 89.86 radiation 1.0 1440 < th dose independent rect. 3 1
157 89.86 temperature 10.0 1440 > th dose independent rect. 4 23
160 89.86 radiation 1.0 1440 < th dose dependent rect. 3 1
176 90.13 wind 9.0 30 < th dose independent rect. 3 23
196 97.92 humidity 50.0 30 > th dose independent rect. 3 23
221 103.22 atmosphere 1015.0 30 < th dose independent rect. 3 23
272 106.87 humidity 90.0 90 < th dose independent rect. 2 1
277 108.03 wind 1.0 10 < th dose independent rect. 15 12
278 108.05 wind 1.0 10 < th dose independent rect. 17 10
281 108.08 wind 1.0 10 < th dose independent rect. 21 6
388 112.89 temperature 10.0 30 > th dose dependent rect. 3 23
394 113.23 temperature 30.0 30 < th dose independent rect. 3 23
396 113.28 humidity 90.0 10 > th dose independent rect. 24 3
431 114.27 wind 1.0 10 > th dose independent rect. 23 23
434 114.40 radiation 40.0 30 < th dose dependent rect. 3 23
442 114.67 wind 1.0 30 > th dose dependent rect. 2 1
469 115.41 wind 1.0 10 > th dose independent sin 14 NA
480 115.65 wind 3.0 30 < th dose dependent rect. 22 5
490 116.00 temperature 10.0 720 > th dose independent rect. 15 8
491 116.00 temperature 10.0 720 > th dose independent rect. 23 16
492 116.01 radiation 10.0 10 < th dose independent rect. 3 23
494 116.04 temperature 10.0 720 > th dose independent rect. 3 8
495 116.04 atmosphere 995.0 720 > th dose independent rect. 3 8
496 116.04 temperature 10.0 720 > th dose independent rect. 11 16
497 116.09 atmosphere 1015.0 1440 < th dose independent rect. 3 1
527 116.24 wind 9.0 720 < th dose independent rect. 3 8
528 116.31 wind 1.0 30 > th dose independent rect. 3 23
536 116.56 humidity 50.0 720 > th dose independent rect. 3 8
546 116.93 precipitation 0.1 720 < th dose independent rect. 15 8
547 116.93 wind 3.0 30 < th dose dependent rect. 20 7
548 116.93 precipitation 0.1 720 < th dose dependent rect. 15 8
557 117.11 atmosphere 995.0 720 > th dose independent rect. 23 16
564 117.27 atmosphere 1015.0 720 < th dose independent rect. 3 8
570 117.35 temperature 25.0 270 > th dose independent rect. 19 8
624 117.75 wind 3.0 30 < th dose dependent rect. 16 11
672 118.21 atmosphere 995.0 720 > th dose independent rect. 15 8
677 118.28 radiation 40.0 720 < th dose independent rect. 15 8
687 118.39 wind 3.0 30 < th dose dependent rect. 11 16
709 118.64 atmosphere 995.0 720 > th dose independent rect. 11 16
715 118.70 wind 1.0 10 > th dose independent rect. 16 15
716 118.70 wind 1.0 10 > th dose independent rect. 21 23
719 118.73 precipitation 0.1 720 < th dose independent rect. 11 16
720 118.73 precipitation 0.1 720 < th dose dependent rect. 11 16
738 119.00 radiation 40.0 30 < th dose independent rect. 3 23
810 119.17 precipitation 0.1 720 < th dose independent rect. 3 8
811 119.17 precipitation 0.1 720 < th dose dependent rect. 3 8
883 119.81 precipitation 0.1 720 < th dose independent rect. 23 16
884 119.81 precipitation 0.1 720 < th dose dependent rect. 23 16
922 120.27 wind 1.0 10 < th dose independent sin 16 NA
941 120.47 wind 1.0 10 > th dose independent no NA NA
996 120.69 atmosphere 1000.0 10 > th dose independent rect. 16 10