Os03g0185400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0185400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 325.71 | 0.848 | 3.15 | -0.161 | 0.0852 | -0.586 | -0.342 | 0.748 | -0.351 | 7.41 | 24.6 | 882 | -- | -- |
| 326.49 | 0.842 | 3.13 | 0.0658 | 0.0236 | -0.561 | -0.163 | -- | -0.284 | 7.53 | 24.5 | 991 | -- | -- |
| 325.8 | 0.841 | 3.15 | -0.147 | 0.035 | -0.593 | -- | 0.668 | -0.345 | 7.07 | 24.6 | 976 | -- | -- |
| 326.53 | 0.842 | 3.12 | 0.0394 | 0.0425 | -0.556 | -- | -- | -0.277 | 6.56 | 24.58 | 976 | -- | -- |
| 325.85 | 0.841 | 3.15 | -0.138 | -- | -0.59 | -- | 0.646 | -0.34 | -- | 24.53 | 998 | -- | -- |
| 336.39 | 0.86 | 3.08 | 0.25 | 0.2 | -- | 0.0806 | -- | -0.0682 | 0.835 | -- | -- | -- | -- |
| 336.41 | 0.859 | 3.08 | 0.247 | 0.2 | -- | -- | -- | -0.0688 | 0.913 | -- | -- | -- | -- |
| 326.58 | 0.842 | 3.12 | 0.0637 | -- | -0.555 | -- | -- | -0.278 | -- | 24.58 | 998 | -- | -- |
| 326.58 | 0.842 | 3.12 | -- | 0.0528 | -0.572 | -- | -- | -0.282 | 5.41 | 24.5 | 977 | -- | -- |
| 338.9 | 0.86 | 3.08 | 0.255 | -- | -- | -- | -- | -0.065 | -- | -- | -- | -- | -- |
| 338.02 | 0.86 | 3.09 | -- | 0.204 | -- | -- | -- | -0.0963 | 0.966 | -- | -- | -- | -- |
| 326.68 | 0.842 | 3.13 | -- | -- | -0.569 | -- | -- | -0.289 | -- | 24.56 | 998 | -- | -- |
| 340.61 | 0.861 | 3.08 | -- | -- | -- | -- | -- | -0.0932 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 315.35 | humidity | 80.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 6 | 315.35 | humidity | 80.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 19 | 316.38 | wind | 3.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 29 | 318.03 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 1 | 1 |
| 36 | 318.03 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 53 | 320.18 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 56 | 321.41 | wind | 3.0 | 10 | > th | dose independent | rect. | 5 | 2 |
| 57 | 321.45 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 5 |
| 75 | 321.50 | wind | 1.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 76 | 321.52 | humidity | 50.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 78 | 321.52 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 15 | 1 |
| 84 | 321.95 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 91 | 322.07 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 14 | 2 |
| 167 | 322.19 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 11 | 5 |
| 189 | 322.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 202 | 322.79 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 203 | 322.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 8 |
| 204 | 322.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 8 |
| 223 | 322.83 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 8 |
| 229 | 322.91 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 233 | 323.01 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 234 | 323.08 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 241 | 323.24 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 2 |
| 256 | 323.40 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 19 | 6 |
| 274 | 323.55 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 275 | 323.55 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 14 | 13 |
| 278 | 323.57 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 289 | 323.67 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 298 | 323.77 | temperature | 25.0 | 270 | > th | dose independent | sin | 10 | NA |
| 306 | 323.87 | humidity | 50.0 | 10 | < th | dose independent | sin | 6 | NA |
| 315 | 323.94 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 13 |
| 322 | 324.01 | temperature | 25.0 | 270 | < th | dose independent | sin | 11 | NA |
| 324 | 324.04 | wind | 1.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 326 | 324.06 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 15 | 13 |
| 447 | 324.80 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 457 | 324.87 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 4 |
| 466 | 324.96 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 22 |
| 471 | 324.98 | wind | 1.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 473 | 324.98 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 6 |
| 480 | 325.04 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 481 | 325.05 | atmosphere | 1005.0 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 498 | 325.12 | temperature | 25.0 | 270 | < th | dose independent | rect. | 13 | 20 |
| 507 | 325.16 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 19 |
| 516 | 325.20 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 5 | NA |
| 522 | 325.23 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 526 | 325.27 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 5 | NA |
| 527 | 325.27 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 5 | NA |
| 530 | 325.30 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 5 | NA |
| 547 | 325.34 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 561 | 325.42 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 4 | 11 |
| 567 | 325.45 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 577 | 325.52 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 580 | 325.53 | atmosphere | 1005.0 | 720 | < th | dose dependent | rect. | 22 | 5 |
| 582 | 325.54 | temperature | 25.0 | 720 | < th | dose independent | rect. | 2 | 19 |
| 586 | 325.57 | wind | 1.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 620 | 325.69 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 3 | 11 |
| 631 | 325.74 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 650 | 325.77 | wind | 3.0 | 90 | < th | dose dependent | rect. | 24 | 3 |
| 664 | 325.82 | temperature | 20.0 | 10 | > th | dose independent | rect. | 4 | 11 |
| 669 | 325.83 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 24 | 3 |
| 671 | 325.84 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 707 | 325.95 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 724 | 325.99 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 17 | 11 |
| 747 | 326.05 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 749 | 326.05 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 780 | 326.12 | wind | 3.0 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 789 | 326.14 | humidity | 60.0 | 10 | > th | dose independent | rect. | 12 | 12 |
| 790 | 326.14 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 21 |
| 802 | 326.17 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 10 | 5 |
| 807 | 326.18 | wind | 3.0 | 1440 | > th | dose independent | rect. | 8 | 19 |
| 830 | 326.21 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 842 | 326.24 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 851 | 326.25 | atmosphere | 1005.0 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 853 | 326.25 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 16 | 20 |
| 870 | 326.27 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 873 | 326.28 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 16 | 19 |
| 896 | 326.29 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 903 | 326.30 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 18 | 20 |
| 917 | 326.33 | wind | 3.0 | 90 | < th | dose independent | rect. | 24 | 3 |
| 920 | 326.33 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 3 | 11 |
| 937 | 326.35 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 938 | 326.36 | humidity | 60.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 967 | 326.40 | wind | 3.0 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 970 | 326.42 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 971 | 326.42 | atmosphere | 1005.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 993 | 326.46 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 4 |
| 995 | 326.46 | wind | 3.0 | 1440 | > th | dose independent | rect. | 19 | 20 |