Os03g0185200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os03g0185200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.19 | 0.302 | 8.25 | -0.794 | 0.542 | -0.981 | 0.318 | -0.834 | -0.0404 | 20.7 | 21.29 | 6 | -- | -- |
| 41.68 | 0.303 | 8.26 | -0.844 | 0.542 | -0.771 | 0.242 | -- | -0.0501 | 20.6 | 21.62 | 3 | -- | -- |
| 41.4 | 0.302 | 8.25 | -0.811 | 0.543 | -0.937 | -- | -0.675 | -0.0438 | 20.6 | 21.46 | 3 | -- | -- |
| 41.86 | 0.303 | 8.26 | -0.852 | 0.541 | -0.785 | -- | -- | -0.0497 | 20.5 | 21.52 | 2 | -- | -- |
| 57.57 | 0.355 | 8.23 | -0.805 | -- | -0.869 | -- | -0.661 | -0.0327 | -- | 20.8 | 3 | -- | -- |
| 47.28 | 0.322 | 8.24 | -0.707 | 0.514 | -- | 0.308 | -- | 0.0232 | 20 | -- | -- | -- | -- |
| 47.57 | 0.323 | 8.24 | -0.716 | 0.514 | -- | -- | -- | 0.0235 | 20 | -- | -- | -- | -- |
| 57.92 | 0.356 | 8.24 | -0.832 | -- | -0.685 | -- | -- | -0.0379 | -- | 21 | 3 | -- | -- |
| 59.49 | 0.361 | 8.23 | -- | 0.53 | -0.396 | -- | -- | 0.074 | 20.2 | 21.52 | 2 | -- | -- |
| 61.98 | 0.368 | 8.23 | -0.721 | -- | -- | -- | -- | 0.0168 | -- | -- | -- | -- | -- |
| 61.07 | 0.366 | 8.22 | -- | 0.519 | -- | -- | -- | 0.103 | 19.9 | -- | -- | -- | -- |
| 74.82 | 0.404 | 8.21 | -- | -- | -0.294 | -- | -- | 0.0769 | -- | 21.3 | 3 | -- | -- |
| 75.69 | 0.406 | 8.21 | -- | -- | -- | -- | -- | 0.0968 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.36 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 23 |
| 3 | 40.97 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 19 |
| 15 | 41.12 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 21 |
| 24 | 41.22 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 14 |
| 26 | 41.22 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 21 |
| 31 | 41.24 | temperature | 20.0 | 10 | < th | dose independent | rect. | 8 | 22 |
| 44 | 41.34 | temperature | 20.0 | 10 | < th | dose independent | sin | 10 | NA |
| 66 | 41.37 | temperature | 20.0 | 10 | < th | dose independent | no | NA | NA |
| 71 | 41.37 | temperature | 20.0 | 10 | < th | dose independent | rect. | 1 | 23 |
| 73 | 41.37 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 79 | 41.38 | temperature | 20.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 82 | 41.39 | temperature | 20.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 83 | 41.40 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 90 | 41.43 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 19 |
| 101 | 41.46 | temperature | 20.0 | 10 | > th | dose independent | sin | 10 | NA |
| 102 | 41.46 | temperature | 20.0 | 10 | > th | dose independent | no | NA | NA |
| 109 | 41.47 | temperature | 20.0 | 270 | < th | dose independent | rect. | 10 | 18 |
| 118 | 41.49 | temperature | 20.0 | 10 | < th | dose independent | rect. | 5 | 23 |
| 130 | 41.57 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 17 |
| 132 | 41.57 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 19 |
| 158 | 41.63 | temperature | 20.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 203 | 41.73 | temperature | 20.0 | 270 | < th | dose independent | rect. | 14 | 14 |
| 255 | 41.84 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 23 |
| 283 | 41.90 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 23 |
| 313 | 41.95 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 11 |
| 326 | 41.98 | temperature | 20.0 | 270 | > th | dose independent | sin | 16 | NA |
| 359 | 42.04 | temperature | 20.0 | 270 | < th | dose independent | sin | 16 | NA |
| 394 | 42.13 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 12 |
| 453 | 42.25 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 23 |
| 454 | 42.25 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 456 | 42.26 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 8 |
| 459 | 42.27 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 7 |
| 468 | 42.29 | temperature | 20.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 471 | 42.30 | temperature | 20.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 473 | 42.30 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 485 | 42.32 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 489 | 42.33 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 525 | 42.36 | temperature | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 526 | 42.36 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 8 | 23 |
| 528 | 42.36 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 529 | 42.36 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 542 | 42.38 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 543 | 42.38 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 551 | 42.39 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 596 | 42.44 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 597 | 42.45 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 607 | 42.45 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 616 | 42.46 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 9 | 19 |
| 635 | 42.48 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 23 |
| 656 | 42.51 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 673 | 42.53 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 719 | 42.57 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 15 | 17 |
| 811 | 42.64 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 883 | 42.73 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 973 | 42.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |