FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0184100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.11 (0.0473) R2 : 0.94
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.27 (0.123) R2dC : 0.354 R2C : 0.181
β3 : -9.28 (0.124) R2dE : 0.759 R2E : 0.587
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.182 (0.0997) R2dN8 : 0.000538 R2N8 : -0.00111
σ : 0.889
deviance : 364.6
__
_____
C
peak time of C : 16
E
wheather : temperature
threshold : 3.576
memory length : 192
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.48
open length of G : 7.79

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
390.88 0.929 8.1 0.181 6.02 -8.44 0.209 -1.89 0.323 16.5 7.091 120 4.82 8
397.95 0.929 8.09 0.193 5.93 -8.55 -0.00494 -- 0.321 16.5 6.334 127 4.74 7.97
382.37 0.911 8.13 0.459 5.99 -8.27 -- -1.22 0.359 16.6 4.785 153 4.7 7.96
365 0.89 8.11 0.243 6.32 -9.22 -- -- 0.178 16.1 4.133 193 4.52 7.72
1354.32 1.71 7.85 0.904 -- -8.72 -- -0.513 0.744 -- 0.274 230 2.11 9.06
1307.41 1.7 8.35 -0.137 9.4 -- 1.97 -- 0.0225 19.7 -- -- -- --
1318.36 1.7 8.34 -0.185 9.4 -- -- -- 0.0262 19.7 -- -- -- --
1302.53 1.68 8.07 0.199 -- -9.4 -- -- 0.331 -- -1.1 244 2.32 8.57
364.6 0.889 8.11 -- 6.27 -9.28 -- -- 0.182 16 3.576 192 4.48 7.79
6080.87 3.64 8.12 -0.31 -- -- -- -- -0.112 -- -- -- -- --
1319.26 1.7 8.34 -- 9.41 -- -- -- 0.0468 19.7 -- -- -- --
1284.34 1.67 8.05 -- -- -9.48 -- -- 0.257 -- -0.1566 287 1.55 9.1
6083.4 3.64 8.11 -- -- -- -- -- -0.0776 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 413.87 temperature 10.0 90 > th dose dependent rect. 5 8
3 458.54 temperature 15.0 270 > th dose independent rect. 4 8
7 477.95 wind 7.0 270 < th dose independent rect. 4 8
11 495.69 humidity 50.0 270 > th dose independent rect. 17 18
12 496.81 precipitation 0.1 270 < th dose independent rect. 4 8
13 496.81 precipitation 0.1 270 < th dose dependent rect. 4 8
15 499.74 humidity 50.0 270 > th dose independent rect. 4 8
17 501.57 atmosphere 995.0 270 > th dose independent rect. 4 8
18 501.57 atmosphere 1015.0 270 < th dose independent rect. 4 8
19 501.57 temperature 10.0 270 > th dose independent rect. 12 16
20 504.00 wind 9.0 270 < th dose independent rect. 17 18
21 504.99 wind 9.0 270 < th dose independent rect. 12 16
22 507.30 temperature 10.0 270 > th dose independent rect. 11 6
23 507.30 atmosphere 1015.0 270 < th dose independent rect. 11 6
24 507.30 temperature 10.0 270 > th dose independent rect. 17 18
25 507.56 precipitation 0.1 270 < th dose independent rect. 11 6
26 507.56 precipitation 0.1 270 < th dose dependent rect. 11 6
29 509.25 radiation 20.0 270 < th dose independent rect. 16 8
31 511.72 radiation 40.0 270 < th dose dependent rect. 16 7
32 512.72 atmosphere 1015.0 270 < th dose independent rect. 24 16
33 512.74 temperature 10.0 270 > th dose independent rect. 16 8
34 512.74 radiation 40.0 270 < th dose independent rect. 16 8
35 512.74 temperature 10.0 270 > th dose independent rect. 24 16
36 513.04 precipitation 0.1 270 < th dose independent rect. 12 16
37 513.04 precipitation 0.1 270 < th dose dependent rect. 12 16
43 518.56 wind 9.0 270 < th dose independent rect. 11 6
44 518.75 atmosphere 995.0 270 > th dose independent rect. 17 18
45 519.39 wind 1.0 270 > th dose independent rect. 11 6
46 520.09 wind 9.0 270 < th dose independent rect. 16 8
54 524.63 precipitation 0.1 270 < th dose independent rect. 17 18
55 524.63 precipitation 0.1 270 < th dose dependent rect. 17 18
59 528.66 precipitation 0.1 270 < th dose independent rect. 24 16
60 528.66 precipitation 0.1 270 < th dose dependent rect. 24 16
62 532.01 radiation 1.0 270 > th dose independent rect. 11 6
63 533.27 wind 9.0 270 < th dose independent rect. 24 16
64 533.44 atmosphere 995.0 270 > th dose independent rect. 24 16
77 543.01 atmosphere 995.0 270 > th dose independent rect. 11 6
78 543.83 temperature 10.0 10 > th dose dependent rect. 6 7
81 547.18 precipitation 0.1 270 < th dose independent rect. 16 8
82 547.18 precipitation 0.1 270 < th dose dependent rect. 16 8
85 548.20 humidity 50.0 270 > th dose independent rect. 16 7
89 550.64 atmosphere 995.0 270 > th dose independent rect. 16 8
99 554.79 wind 1.0 270 > th dose independent rect. 16 8
153 573.26 temperature 15.0 270 > th dose independent rect. 6 16
219 586.27 radiation 10.0 270 < th dose dependent rect. 22 9
235 589.12 wind 1.0 90 > th dose independent rect. 5 8
236 589.72 atmosphere 995.0 270 > th dose independent rect. 12 16
238 590.38 temperature 10.0 270 > th dose independent rect. 22 8
239 590.38 temperature 30.0 270 < th dose independent rect. 22 8
240 590.38 humidity 50.0 270 > th dose independent rect. 22 8
243 590.38 atmosphere 995.0 270 > th dose independent rect. 22 8
244 590.38 radiation 20.0 270 < th dose independent rect. 22 8
250 590.68 wind 9.0 270 < th dose independent rect. 22 8
256 592.25 wind 9.0 270 < th dose independent rect. 6 16
258 592.74 radiation 1.0 90 > th dose independent rect. 4 9
270 593.19 radiation 1.0 270 < th dose dependent rect. 22 16
286 596.82 precipitation 0.1 270 < th dose independent rect. 22 8
287 596.82 precipitation 0.1 270 < th dose dependent rect. 22 8
289 597.05 radiation 1.0 270 < th dose dependent rect. 22 13
297 598.42 radiation 1.0 270 < th dose independent rect. 22 16
302 599.29 temperature 10.0 90 > th dose dependent rect. 13 16
318 602.12 radiation 1.0 270 < th dose independent rect. 22 13
340 607.14 humidity 90.0 270 < th dose independent rect. 11 6
364 611.44 temperature 10.0 270 > th dose dependent rect. 22 8
401 618.49 precipitation 0.1 270 < th dose independent rect. 6 16
402 618.49 precipitation 0.1 270 < th dose dependent rect. 6 16
410 619.95 wind 1.0 270 > th dose independent rect. 17 18
464 625.92 atmosphere 1015.0 270 < th dose independent rect. 22 8
466 626.02 wind 9.0 270 < th dose dependent rect. 5 7
506 632.77 atmosphere 1015.0 270 < th dose independent rect. 12 16
514 634.44 humidity 50.0 270 > th dose dependent rect. 22 8
516 635.05 temperature 30.0 270 < th dose independent rect. 17 6
521 635.55 temperature 30.0 270 < th dose independent rect. 17 17
537 636.80 temperature 20.0 10 > th dose independent rect. 6 7
548 639.27 radiation 40.0 90 < th dose independent rect. 13 16
600 643.62 humidity 50.0 270 > th dose independent rect. 24 16
629 647.65 atmosphere 1015.0 270 < th dose independent rect. 6 16
651 649.82 humidity 90.0 270 < th dose independent rect. 12 4
671 652.10 atmosphere 1015.0 270 < th dose independent rect. 17 6
712 656.17 wind 9.0 270 < th dose independent rect. 15 22
767 661.67 wind 9.0 10 < th dose independent rect. 6 7
771 662.10 temperature 10.0 270 > th dose independent rect. 13 2
773 662.10 atmosphere 1010.0 270 < th dose independent rect. 13 2
775 662.10 temperature 10.0 270 > th dose independent rect. 15 22
789 663.04 temperature 10.0 1440 > th dose independent rect. 14 6
792 663.04 temperature 10.0 1440 > th dose independent rect. 20 18
795 663.04 atmosphere 995.0 1440 > th dose independent rect. 20 18
796 663.13 temperature 10.0 270 > th dose dependent rect. 12 4
808 663.61 wind 9.0 270 < th dose independent rect. 13 2
828 664.90 wind 1.0 270 > th dose independent rect. 12 16
830 665.12 precipitation 0.1 270 < th dose independent rect. 13 2
831 665.12 precipitation 0.1 270 < th dose dependent rect. 13 2
833 665.40 wind 9.0 270 < th dose dependent rect. 22 8
865 667.51 precipitation 0.1 10 < th dose independent rect. 6 7
866 667.51 precipitation 0.1 10 < th dose dependent rect. 6 7
875 668.28 temperature 10.0 10 > th dose independent rect. 6 7
877 668.28 atmosphere 995.0 10 > th dose independent rect. 6 7
878 668.28 atmosphere 1015.0 10 < th dose independent rect. 6 7
879 668.28 temperature 10.0 10 > th dose independent rect. 13 17
881 669.12 atmosphere 995.0 270 > th dose independent rect. 13 2
953 673.67 wind 1.0 270 > th dose independent rect. 13 2
967 676.01 radiation 1.0 270 < th dose dependent sin 7 NA
969 676.12 temperature 10.0 270 > th dose dependent rect. 11 6
974 677.16 wind 9.0 10 < th dose independent rect. 13 17
987 678.50 radiation 40.0 10 < th dose independent rect. 13 17
992 678.75 wind 1.0 270 > th dose independent rect. 6 16
995 679.07 humidity 90.0 90 < th dose independent rect. 5 8