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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0183900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0134) R2 : 0.00174
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0252 (0.0282) R2dN8 : 0.00224 R2N8 : 0.00174
σ : 0.253
deviance : 29.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.26 0.25 2.94 -0.0134 0.0663 -0.128 0.212 0.906 0.0388 12.7 60 272 -- --
28.89 0.25 2.94 0.0308 0.0719 0.0838 0.0866 -- 0.0277 12.9 49.13 363 -- --
28.43 0.248 2.94 -0.00504 0.0667 -0.123 -- 0.812 0.0389 12.8 60.28 288 -- --
28.86 0.25 2.94 0.0363 0.0645 0.0971 -- -- 0.0208 13.1 49 1043 -- --
28.69 0.249 2.94 -0.00659 -- -0.142 -- 0.819 0.0402 -- 60 285 -- --
28.92 0.252 2.94 0.0144 0.0725 -- 0.098 -- 0.0277 12.8 -- -- -- --
28.96 0.252 2.94 0.0182 0.0729 -- -- -- 0.0283 13.2 -- -- -- --
29.11 0.251 2.94 0.0388 -- 0.127 -- -- 0.0188 -- 49.13 985 -- --
28.89 0.25 2.94 -- 0.0657 0.0832 -- -- 0.0196 13.2 49 985 -- --
29.29 0.253 2.94 0.0154 -- -- -- -- 0.0269 -- -- -- -- --
28.97 0.252 2.94 -- 0.0726 -- -- -- 0.0263 13.2 -- -- -- --
29.15 0.251 2.94 -- -- 0.112 -- -- 0.0157 -- 49.27 985 -- --
29.3 0.253 2.94 -- -- -- -- -- 0.0252 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.79 humidity 70.0 4320 > th dose independent rect. 21 1
2 22.87 temperature 25.0 30 > th dose independent rect. 20 1
3 22.90 temperature 10.0 1440 > th dose independent rect. 21 1
6 22.90 temperature 30.0 1440 < th dose independent rect. 21 1
10 22.90 humidity 50.0 1440 > th dose independent rect. 21 1
16 22.90 atmosphere 995.0 1440 > th dose independent rect. 21 1
17 22.90 radiation 1.0 1440 < th dose independent rect. 21 1
37 22.90 temperature 10.0 1440 > th dose independent rect. 22 23
40 22.92 temperature 20.0 30 > th dose dependent rect. 20 1
41 22.93 radiation 40.0 1440 < th dose dependent rect. 21 1
46 22.96 humidity 90.0 30 < th dose independent rect. 20 1
49 22.98 atmosphere 1005.0 30 > th dose dependent rect. 20 1
50 23.00 wind 3.0 30 > th dose independent rect. 20 1
51 23.00 wind 5.0 30 < th dose independent rect. 20 1
56 23.01 temperature 10.0 30 > th dose independent rect. 20 1
58 23.01 temperature 30.0 30 < th dose independent rect. 20 1
59 23.01 humidity 50.0 30 > th dose independent rect. 20 1
63 23.01 atmosphere 995.0 30 > th dose independent rect. 20 1
65 23.01 atmosphere 1010.0 30 < th dose independent rect. 20 1
67 23.01 radiation 1.0 30 < th dose independent rect. 20 1
72 23.01 precipitation 0.1 30 < th dose independent rect. 20 1
73 23.01 temperature 10.0 30 > th dose independent rect. 21 23
74 23.01 atmosphere 995.0 30 > th dose dependent rect. 20 1
76 23.01 radiation 1.0 30 < th dose dependent rect. 20 1
81 23.01 precipitation 0.1 30 < th dose dependent rect. 20 1
82 23.03 wind 1.0 30 > th dose dependent rect. 20 1
83 23.04 wind 9.0 30 < th dose dependent rect. 20 1
84 23.05 humidity 50.0 30 > th dose dependent rect. 20 1
89 23.10 humidity 90.0 30 < th dose dependent rect. 20 1
91 23.13 atmosphere 1015.0 30 < th dose dependent rect. 20 1
92 23.14 radiation 40.0 14400 < th dose dependent rect. 21 1
99 23.29 wind 9.0 30 < th dose independent rect. 21 23
102 23.36 wind 9.0 1440 < th dose independent rect. 21 1
105 23.42 temperature 30.0 30 < th dose dependent rect. 20 1
169 25.78 atmosphere 995.0 30 > th dose independent rect. 21 23
174 25.95 precipitation 0.1 30 < th dose independent rect. 21 23
175 25.95 precipitation 0.1 30 < th dose dependent rect. 21 23
191 26.42 humidity 50.0 10 > th dose independent rect. 21 23
201 26.75 precipitation 0.1 1440 < th dose independent rect. 21 1
204 26.75 precipitation 0.1 1440 < th dose dependent rect. 21 1
241 26.98 atmosphere 1015.0 30 < th dose independent rect. 21 23
278 27.34 humidity 70.0 4320 > th dose independent rect. 22 7
285 27.38 radiation 20.0 10 < th dose dependent rect. 21 23
304 27.47 temperature 10.0 30 > th dose dependent rect. 21 23
307 27.49 wind 9.0 30 < th dose dependent rect. 21 23
308 27.50 wind 9.0 270 > th dose independent rect. 9 1
324 27.52 temperature 25.0 10 > th dose dependent rect. 20 9
349 27.60 humidity 50.0 4320 > th dose independent rect. 16 1
358 27.62 atmosphere 1010.0 10 > th dose dependent rect. 12 1
398 27.64 wind 9.0 4320 > th dose dependent rect. 14 1
489 27.67 atmosphere 1010.0 10 < th dose independent rect. 8 12
500 27.68 radiation 10.0 30 < th dose independent rect. 21 23
515 27.69 atmosphere 1010.0 30 > th dose dependent sin 23 NA
946 27.81 wind 7.0 270 > th dose dependent rect. 9 1
961 27.83 wind 9.0 4320 > th dose independent rect. 14 1
973 27.85 humidity 70.0 4320 < th dose independent rect. 20 11
989 27.86 humidity 70.0 4320 < th dose dependent rect. 20 11
990 27.87 radiation 1.0 270 < th dose independent rect. 8 1
997 27.87 radiation 1.0 270 < th dose dependent rect. 8 1