Os03g0183800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os03g0183800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Leucine-rich repeat transmembrane protein kinase 1 (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 347.27 | 0.876 | 9.3 | -4.34 | 1.09 | 3.33 | -0.0184 | -6.19 | -0.687 | 17.1 | 25.27 | 861 | 6.87 | -- |
| 353.15 | 0.875 | 9.16 | -3.36 | 1.06 | 2.58 | 0.233 | -- | -0.434 | 17.2 | 25.4 | 913 | 7.68 | -- |
| 346.35 | 0.867 | 9.3 | -4.35 | 1.11 | 3.26 | -- | -6.06 | -0.679 | 17.1 | 25.33 | 901 | 7.26 | -- |
| 353.02 | 0.875 | 9.17 | -3.31 | 1.06 | 2.55 | -- | -- | -0.457 | 17.3 | 25.35 | 911 | 7.64 | -- |
| 388.76 | 0.918 | 9.22 | -3.98 | -- | 2.78 | -- | -4.08 | -0.508 | -- | 25.9 | 853 | 9.49 | -- |
| 527.13 | 1.08 | 9.16 | -2.8 | 0.84 | -- | -0.623 | -- | -0.388 | 20.3 | -- | -- | -- | -- |
| 528.32 | 1.08 | 9.16 | -2.78 | 0.84 | -- | -- | -- | -0.388 | 20.3 | -- | -- | -- | -- |
| 393.82 | 0.924 | 9.16 | -3.33 | -- | 2.37 | -- | -- | -0.462 | -- | 25.74 | 861 | 9.94 | -- |
| 630.43 | 1.17 | 9.07 | -- | 0.975 | 1.94 | -- | -- | -0.0915 | 17.4 | 25.4 | 864 | 7 | -- |
| 567.43 | 1.11 | 9.14 | -2.78 | -- | -- | -- | -- | -0.397 | -- | -- | -- | -- | -- |
| 731.88 | 1.27 | 9.09 | -- | 0.855 | -- | -- | -- | -0.0786 | 20.1 | -- | -- | -- | -- |
| 668.75 | 1.2 | 9.04 | -- | -- | 1.86 | -- | -- | 0.0298 | -- | 26.43 | 790 | 7.62 | -- |
| 771.96 | 1.3 | 9.07 | -- | -- | -- | -- | -- | -0.0883 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 347.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 4 | 350.25 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 31 | 362.63 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 44 | 367.29 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 46 | 367.62 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 16 |
| 61 | 370.55 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 16 |
| 67 | 371.82 | humidity | 70 | 720 | < th | dose independent | sin | 11 | NA |
| 72 | 373.16 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 73 | 373.33 | humidity | 60 | 1440 | > th | dose independent | sin | 14 | NA |
| 76 | 373.38 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 3 |
| 91 | 374.06 | humidity | 60 | 1440 | < th | dose independent | sin | 14 | NA |
| 95 | 374.37 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 97 | 374.49 | humidity | 70 | 1440 | < th | dose dependent | sin | 12 | NA |
| 107 | 375.82 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 110 | 376.08 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 145 | 377.70 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 147 | 377.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 13 |
| 151 | 377.87 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 152 | 377.91 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 8 |
| 154 | 377.91 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 18 |
| 158 | 377.95 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 199 | 378.79 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 486 | 384.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 5 |
| 505 | 384.72 | temperature | 30 | 720 | > th | dose independent | rect. | 17 | 2 |
| 519 | 384.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 527 | 385.00 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 21 |
| 530 | 385.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 568 | 385.61 | humidity | 60 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 633 | 386.87 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 652 | 387.03 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 660 | 387.15 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 21 |
| 721 | 387.59 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 735 | 387.61 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 736 | 387.61 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 21 |
| 758 | 387.67 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 17 |
| 787 | 387.85 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 789 | 387.88 | humidity | 60 | 1440 | > th | dose independent | rect. | 6 | 19 |
| 816 | 387.97 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 818 | 387.97 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 820 | 387.99 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 845 | 388.03 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 21 |
| 893 | 388.24 | temperature | 30 | 1440 | > th | dose independent | sin | 13 | NA |
| 936 | 388.54 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |