Os03g0183600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0183600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.31 | 0.65 | 4.04 | -2.51 | 1.19 | -0.741 | -2.65 | 2.3 | -0.387 | 1.64 | 80 | 682 | -- | -- |
| 201.51 | 0.661 | 4.03 | -2.35 | 1.2 | -0.584 | -2.9 | -- | -0.352 | 1.06 | 81 | 680 | -- | -- |
| 212.23 | 0.679 | 4.05 | -2.54 | 1.09 | -0.668 | -- | 3.74 | -0.397 | 0.781 | 79 | 857 | -- | -- |
| 236.52 | 0.716 | 4.02 | -2.25 | 1.24 | -0.681 | -- | -- | -0.341 | 1.38 | 80.98 | 650 | -- | -- |
| 263.38 | 0.756 | 4.01 | -2.64 | -- | -1.57 | -- | 4.81 | -0.388 | -- | 78.14 | 965 | -- | -- |
| 210.6 | 0.68 | 4.04 | -2.34 | 1.32 | -- | -2.91 | -- | -0.335 | 0.197 | -- | -- | -- | -- |
| 247.02 | 0.736 | 4.03 | -2.22 | 1.33 | -- | -- | -- | -0.32 | 0.058 | -- | -- | -- | -- |
| 295.19 | 0.8 | 4.02 | -2.23 | -- | -1.52 | -- | -- | -0.383 | -- | 80.62 | 949 | -- | -- |
| 361.58 | 0.886 | 3.96 | -- | 1.35 | -0.639 | -- | -- | -0.101 | 1.33 | 83 | 422 | -- | -- |
| 358.62 | 0.885 | 4 | -2.18 | -- | -- | -- | -- | -0.301 | -- | -- | -- | -- | -- |
| 377.29 | 0.909 | 3.97 | -- | 1.3 | -- | -- | -- | -0.0727 | 24 | -- | -- | -- | -- |
| 414.3 | 0.948 | 3.99 | -- | -- | -1.5 | -- | -- | -0.265 | -- | 86.99 | 914 | -- | -- |
| 484.13 | 1.03 | 3.95 | -- | -- | -- | -- | -- | -0.0594 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.51 | temperature | 20 | 270 | < th | dose dependent | rect. | 12 | 10 |
| 2 | 180.52 | temperature | 20 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 5 | 180.56 | temperature | 20 | 270 | < th | dose dependent | rect. | 17 | 5 |
| 14 | 180.87 | temperature | 20 | 270 | < th | dose dependent | rect. | 19 | 2 |
| 19 | 181.19 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 29 | 181.85 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 16 | 4 |
| 35 | 182.16 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 13 | 3 |
| 37 | 182.20 | temperature | 20 | 270 | < th | dose dependent | sin | 17 | NA |
| 42 | 182.31 | atmosphere | 1015 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 49 | 182.57 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 17 | 11 |
| 56 | 182.77 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 15 | 10 |
| 58 | 182.79 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 77 | 183.12 | temperature | 20 | 30 | < th | dose dependent | rect. | 15 | 9 |
| 99 | 183.32 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 11 |
| 131 | 183.70 | temperature | 20 | 10 | < th | dose dependent | rect. | 18 | 6 |
| 133 | 183.72 | temperature | 20 | 30 | < th | dose dependent | sin | 16 | NA |
| 135 | 183.73 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 10 | 10 |
| 179 | 184.08 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 17 | 11 |
| 192 | 184.18 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 11 |
| 220 | 184.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 4 |
| 241 | 184.98 | temperature | 15 | 720 | > th | dose independent | rect. | 16 | 6 |
| 254 | 185.16 | temperature | 15 | 720 | > th | dose independent | rect. | 10 | 9 |
| 288 | 185.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 4 |
| 334 | 186.19 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 18 | 12 |
| 351 | 186.35 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 358 | 186.43 | humidity | 80 | 270 | > th | dose independent | rect. | 4 | 20 |
| 375 | 186.59 | temperature | 15 | 10 | > th | dose independent | rect. | 1 | 23 |
| 383 | 186.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 10 |
| 389 | 186.75 | temperature | 15 | 720 | > th | dose independent | rect. | 7 | 14 |
| 393 | 186.80 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 5 |
| 394 | 186.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 5 |
| 413 | 186.97 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 452 | 187.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 470 | 187.37 | atmosphere | 1010 | 10 | < th | dose independent | sin | 14 | NA |
| 493 | 187.49 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 11 | 8 |
| 524 | 187.58 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 10 | 12 |
| 531 | 187.60 | temperature | 20 | 90 | < th | dose dependent | rect. | 23 | 2 |
| 532 | 187.60 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 23 | 2 |
| 567 | 187.76 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 19 | 6 |
| 574 | 187.79 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 19 | 1 |
| 577 | 187.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 14 |
| 598 | 187.89 | humidity | 70 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 600 | 187.90 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 10 |
| 657 | 188.16 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 671 | 188.21 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 12 | 12 |
| 682 | 188.22 | atmosphere | 1010 | 10 | > th | dose independent | sin | 14 | NA |
| 691 | 188.23 | temperature | 15 | 270 | > th | dose independent | rect. | 6 | 23 |
| 696 | 188.26 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 708 | 188.30 | humidity | 90 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 734 | 188.32 | temperature | 20 | 30 | < th | dose dependent | rect. | 15 | 17 |
| 737 | 188.33 | humidity | 90 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 757 | 188.38 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 12 | 1 |
| 795 | 188.46 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 23 | 1 |