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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0182900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.66 (0.0555) R2 : 0.257
β1 : -1.03 (0.203) R2dD : 0.0436 R2D : 0.0198
β2 : 1.15 (0.135) R2dC : 0.12 R2C : 0.0851
β3 : 3.26 (0.547) R2dE : 0.059 R2E : 0.0385
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.67 (2.09) R2dD*E : 0.0282 R2D*E : 0.0175
γ1 : -0.536 (0.119) R2dN8 : 0.0448 R2N8 : 0.0266
σ : 1.04
deviance : 495.7
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_____
C
peak time of C : 2.1
E
wheather : radiation
threshold : 6.78
memory length : 24
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.14
open length of G : 8.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
495.68 1.05 3.66 -1.03 1.15 3.26 -0.0899 -8.73 -0.537 2.12 6.743 25 7.14 8.05
513.56 1.06 3.66 -1.07 1.16 2.89 0.157 -- -0.559 2.13 6.929 20 7.2 8.1
495.7 1.04 3.66 -1.03 1.15 3.26 -- -8.67 -0.536 2.1 6.78 24 7.14 8.05
513.64 1.06 3.66 -1.07 1.16 2.89 -- -- -0.56 2.17 6.929 20 7.2 8.1
574.69 1.12 3.65 -0.99 -- 2.83 -- -8.38 -0.518 -- 6.609 24 7.31 8.23
550.46 1.1 3.68 -1.11 1.08 -- 0.124 -- -0.617 2.42 -- -- -- --
550.51 1.1 3.68 -1.11 1.08 -- -- -- -0.618 2.46 -- -- -- --
591.77 1.13 3.66 -1.02 -- 2.77 -- -- -0.541 -- 6.466 20 7.15 8.25
543.81 1.09 3.64 -- 1.13 3.3 -- -- -0.438 2.11 6.74 20 7.46 7.66
619.14 1.16 3.67 -1.06 -- -- -- -- -0.592 -- -- -- -- --
582.99 1.13 3.65 -- 1.06 -- -- -- -0.495 2.44 -- -- -- --
619.33 1.16 3.63 -- -- 2.92 -- -- -0.426 -- 6.271 20 7.31 7.85
649.02 1.19 3.64 -- -- -- -- -- -0.473 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 499.97 radiation 10 30 < th dose dependent rect. 7 8
3 501.45 humidity 80 720 > th dose independent rect. 16 6
13 504.49 humidity 70 720 > th dose dependent rect. 16 6
14 504.79 humidity 70 720 > th dose dependent rect. 19 2
25 505.67 wind 3 10 > th dose independent rect. 3 8
32 505.83 wind 1 43200 > th dose independent rect. 2 2
33 505.86 wind 3 10 > th dose dependent rect. 2 8
47 506.55 wind 3 10 > th dose dependent rect. 24 10
71 507.89 humidity 80 720 > th dose dependent rect. 10 12
75 508.03 wind 1 43200 < th dose independent rect. 2 2
90 508.61 humidity 90 14400 > th dose independent rect. 18 13
105 508.94 wind 1 43200 < th dose dependent rect. 2 2
123 509.48 wind 1 14400 < th dose independent rect. 2 4
164 510.34 humidity 90 14400 < th dose independent rect. 19 12
167 510.36 humidity 90 14400 > th dose independent rect. 20 8
174 510.42 humidity 80 720 > th dose independent sin 19 NA
192 510.66 humidity 80 14400 > th dose dependent rect. 18 12
193 510.67 temperature 20 90 > th dose independent rect. 19 15
197 510.71 humidity 90 14400 > th dose independent sin 10 NA
203 510.81 radiation 40 43200 < th dose dependent rect. 24 5
205 510.84 humidity 80 720 < th dose independent rect. 20 3
206 510.86 wind 1 43200 < th dose independent rect. 18 12
208 510.89 humidity 90 14400 > th dose independent rect. 24 9
229 511.20 humidity 70 720 > th dose independent rect. 17 13
254 511.53 wind 9 4320 < th dose independent rect. 18 2
268 511.66 wind 1 43200 < th dose independent rect. 22 7
271 511.69 wind 5 4320 > th dose dependent rect. 19 1
285 511.80 wind 1 14400 > th dose independent rect. 2 4
288 511.82 humidity 80 14400 > th dose dependent rect. 3 4
291 511.89 humidity 90 14400 > th dose independent rect. 5 2
303 511.98 humidity 80 14400 > th dose dependent rect. 4 2
306 511.99 humidity 70 720 > th dose independent rect. 18 10
324 512.08 wind 5 4320 > th dose dependent rect. 18 3
337 512.19 temperature 20 43200 > th dose independent rect. 10 7
340 512.21 temperature 25 10 < th dose independent rect. 6 4
345 512.25 temperature 20 43200 < th dose independent rect. 10 7
369 512.46 humidity 90 14400 < th dose independent sin 11 NA
373 512.48 wind 9 4320 > th dose independent rect. 18 2
384 512.56 wind 1 43200 < th dose independent rect. 20 10
394 512.61 temperature 20 43200 < th dose independent rect. 10 2
397 512.64 temperature 20 43200 > th dose independent rect. 10 2
399 512.65 humidity 90 14400 > th dose dependent sin 10 NA
412 512.72 humidity 80 43200 > th dose dependent rect. 11 3
431 512.83 temperature 20 43200 > th dose independent rect. 14 3
445 512.89 wind 1 43200 > th dose independent rect. 18 12
446 512.90 temperature 20 43200 < th dose independent rect. 14 3
454 512.95 radiation 1 43200 > th dose independent rect. 10 3
464 512.99 humidity 90 14400 < th dose independent rect. 24 9
469 513.00 radiation 1 43200 < th dose dependent rect. 10 3
491 513.11 humidity 90 14400 < th dose independent rect. 5 2
504 513.15 radiation 1 43200 < th dose independent rect. 10 3
517 513.21 radiation 1 43200 < th dose dependent rect. 9 5
525 513.26 radiation 1 14400 < th dose dependent rect. 19 10
533 513.31 wind 3 10 > th dose dependent rect. 22 12
557 513.41 humidity 80 720 > th dose dependent sin 20 NA
562 513.42 temperature 20 30 > th dose independent rect. 18 21
572 513.47 radiation 1 43200 < th dose independent rect. 24 5
576 513.48 wind 3 4320 > th dose dependent rect. 18 8
585 513.52 radiation 1 14400 < th dose dependent rect. 23 6
670 513.84 radiation 1 43200 < th dose dependent rect. 7 9
672 513.85 wind 5 4320 > th dose independent rect. 18 8
689 513.93 wind 5 4320 > th dose independent rect. 18 5
691 513.93 humidity 90 14400 > th dose dependent rect. 24 11
699 513.96 wind 3 4320 > th dose independent rect. 24 1
707 513.98 wind 9 4320 < th dose independent rect. 24 8
717 514.00 wind 3 4320 > th dose dependent rect. 24 1
727 514.02 wind 3 10 > th dose dependent rect. 20 14
730 514.03 radiation 40 43200 < th dose dependent rect. 3 2
759 514.13 humidity 90 14400 < th dose independent rect. 1 7
765 514.15 radiation 1 43200 < th dose independent rect. 3 2
770 514.15 wind 9 4320 < th dose dependent rect. 18 9
795 514.22 wind 3 10 > th dose independent rect. 3 5
823 514.29 wind 1 14400 < th dose independent rect. 5 1
882 514.45 wind 5 4320 < th dose independent rect. 18 8
926 514.58 wind 3 4320 < th dose independent rect. 24 1
959 514.67 wind 1 43200 > th dose independent rect. 20 10
989 514.74 wind 5 4320 < th dose independent rect. 18 5