Os03g0182400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SAC domain protein 1 (FIG4-like protein AtFIG4).
FiT-DB / Search/ Help/ Sample detail
|
Os03g0182400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to SAC domain protein 1 (FIG4-like protein AtFIG4).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.18 | 0.451 | 6.11 | -0.776 | 1.65 | 0.447 | -0.762 | -0.496 | -0.345 | 7.96 | 24.6 | 254 | -- | -- |
| 92.63 | 0.448 | 6.12 | -0.819 | 1.67 | 0.459 | -0.742 | -- | -0.348 | 7.99 | 24.37 | 181 | -- | -- |
| 93.69 | 0.451 | 6.11 | -0.735 | 1.7 | 0.446 | -- | -0.55 | -0.348 | 7.93 | 24.4 | 232 | -- | -- |
| 94.18 | 0.452 | 6.13 | -0.948 | 1.72 | 0.423 | -- | -- | -0.394 | 7.99 | 24.3 | 147 | -- | -- |
| 202.39 | 0.663 | 6.16 | -0.823 | -- | 0.834 | -- | -0.671 | -0.421 | -- | 25.61 | 400 | -- | -- |
| 102.55 | 0.475 | 6.18 | -1.07 | 1.82 | -- | -0.855 | -- | -0.618 | 7.58 | -- | -- | -- | -- |
| 104.58 | 0.479 | 6.17 | -1.09 | 1.82 | -- | -- | -- | -0.616 | 7.61 | -- | -- | -- | -- |
| 189.38 | 0.641 | 6.11 | -0.703 | -- | 1.3 | -- | -- | -0.109 | -- | 25.6 | 518 | -- | -- |
| 117.12 | 0.504 | 6.12 | -- | 1.7 | 0.48 | -- | -- | -0.278 | 8.04 | 24.3 | 153 | -- | -- |
| 283.03 | 0.786 | 6.22 | -1.07 | -- | -- | -- | -- | -0.589 | -- | -- | -- | -- | -- |
| 135.94 | 0.545 | 6.15 | -- | 1.81 | -- | -- | -- | -0.495 | 7.65 | -- | -- | -- | -- |
| 201.88 | 0.662 | 6.09 | -- | -- | 1.41 | -- | -- | -0.000891 | -- | 25.62 | 532 | -- | -- |
| 312.96 | 0.826 | 6.19 | -- | -- | -- | -- | -- | -0.471 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.25 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 5 | 83.89 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 6 | 83.92 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 23 | 6 |
| 28 | 85.46 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 42 | 86.39 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 22 | 6 |
| 50 | 86.57 | temperature | 25.0 | 270 | > th | dose independent | sin | 10 | NA |
| 51 | 86.59 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 54 | 86.74 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 55 | 86.75 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 60 | 86.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 61 | 86.79 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 75 | 86.88 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 80 | 86.91 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 84 | 86.92 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 90 | 86.94 | temperature | 15.0 | 14400 | < th | dose dependent | sin | 4 | NA |
| 96 | 86.96 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 103 | 86.99 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 139 | 87.07 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 19 | 17 |
| 145 | 87.08 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 19 | 15 |
| 257 | 87.19 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 7 | 23 |
| 260 | 87.20 | temperature | 15.0 | 14400 | < th | dose dependent | no | NA | NA |
| 313 | 87.26 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 346 | 87.34 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 352 | 87.37 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 396 | 87.47 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 413 | 87.51 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 415 | 87.52 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 419 | 87.53 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 434 | 87.58 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 446 | 87.62 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 10 |
| 454 | 87.66 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 480 | 87.75 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 483 | 87.76 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 516 | 87.91 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 521 | 87.95 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 527 | 87.98 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 531 | 88.00 | temperature | 25.0 | 270 | < th | dose independent | sin | 9 | NA |
| 532 | 88.00 | temperature | 25.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 544 | 88.04 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 547 | 88.05 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 20 |
| 562 | 88.15 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 563 | 88.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 566 | 88.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 567 | 88.16 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 574 | 88.18 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 16 | 20 |
| 581 | 88.26 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 583 | 88.29 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 586 | 88.32 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 599 | 88.40 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 612 | 88.48 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 20 |
| 627 | 88.57 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 646 | 88.66 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 672 | 88.76 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 678 | 88.78 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 685 | 88.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 686 | 88.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 689 | 88.82 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 690 | 88.82 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 692 | 88.82 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 18 | 11 |
| 695 | 88.85 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 711 | 88.93 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 731 | 89.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 733 | 89.02 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 734 | 89.02 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 737 | 89.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 738 | 89.02 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 739 | 89.02 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 742 | 89.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 748 | 89.06 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 755 | 89.07 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 758 | 89.09 | humidity | 50.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 759 | 89.09 | humidity | 50.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 762 | 89.10 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 764 | 89.10 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 779 | 89.13 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 780 | 89.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 783 | 89.15 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 788 | 89.17 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 792 | 89.18 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 794 | 89.19 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 805 | 89.22 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 812 | 89.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 815 | 89.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 816 | 89.25 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 11 | NA |
| 824 | 89.28 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 829 | 89.29 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 3 |
| 878 | 89.50 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 885 | 89.51 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 895 | 89.55 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 902 | 89.59 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 904 | 89.60 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 920 | 89.66 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 921 | 89.66 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 922 | 89.66 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 924 | 89.67 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 945 | 89.71 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 959 | 89.72 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 972 | 89.73 | humidity | 50.0 | 43200 | > th | dose independent | sin | 13 | NA |