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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0180800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : ZIM domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.54 (0.0796) R2 : 0.568
β1 : -5.79 (0.373) R2dD : 0.468 R2D : 0.415
β2 : 0.666 (0.227) R2dC : 0.0142 R2C : -0.0485
β3 : 4.24 (0.411) R2dE : 0.191 R2E : 0.193
β4 : 4.46 (0.946) R2dD*C : 0.0431 R2D*C : -0.0371
β5 : 6.89 (1.72) R2dD*E : 0.0431 R2D*E : -0.151
γ1 : 0.146 (0.177) R2dN8 : 0.00113 R2N8 : 0.00399
σ : 1.37
deviance : 847.3
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_____
C
peak time of C : 12.9
E
wheather : temperature
threshold : 32.09
memory length : 78
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 22.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
847.3 1.37 5.54 -5.79 0.666 4.24 4.46 6.89 0.146 12.9 32.09 78 11.1 22.2
875.93 1.38 5.41 -4.78 0.679 4.28 2.05 -- 0.385 12.9 32.83 107 10.8 22.4
919.65 1.41 5.48 -5.69 0.51 4.42 -- 6.67 0.28 11.5 35.88 17 11.4 22.5
886.92 1.39 5.42 -4.75 0.696 4.33 -- -- 0.359 12.2 32.84 105 10.9 22.2
900.42 1.4 5.47 -5.19 -- 3.84 -- 2.55 0.214 -- 53.45 116 10.1 23.7
1064.94 1.53 5.56 -5.58 1.12 -- -1.31 -- -0.182 3.04 -- -- -- --
1070.23 1.53 5.55 -5.56 1.13 -- -- -- -0.175 3.32 -- -- -- --
900.59 1.4 5.46 -4.8 -- 3.66 -- -- 0.319 -- 33.17 171 9.85 22.7
945.21 1.43 5.08 -- 1.21 4.93 -- -- 1.91 3.14 29 47520 10.4 18.4
1141.77 1.58 5.55 -5.51 -- -- -- -- -0.145 -- -- -- -- --
1883.8 2.03 5.41 -- 1.02 -- -- -- 0.444 3.33 -- -- -- --
1029.56 1.49 5.06 -- -- 4.91 -- -- 1.95 -- 28.82 47520 7.18 22.1
1942.1 2.06 5.41 -- -- -- -- -- 0.466 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 853.26 temperature 30 90 < th dose dependent rect. 11 22
2 853.48 temperature 20 10 > th dose dependent rect. 8 21
3 854.69 temperature 20 90 > th dose dependent rect. 7 22
9 858.79 temperature 30 30 < th dose dependent rect. 16 16
16 860.58 temperature 30 90 < th dose dependent rect. 9 23
21 861.86 temperature 20 30 > th dose dependent rect. 13 23
23 862.18 radiation 30 4320 > th dose independent rect. 15 17
30 863.51 temperature 30 90 < th dose dependent rect. 16 23
31 863.73 temperature 30 90 < th dose dependent rect. 21 23
46 866.94 temperature 20 90 > th dose dependent no NA NA
47 867.30 temperature 30 30 < th dose dependent rect. 1 23
53 868.37 temperature 30 90 < th dose dependent no NA NA
56 868.68 temperature 15 4320 > th dose dependent rect. 22 2
65 868.97 temperature 25 4320 < th dose dependent rect. 22 1
73 869.38 temperature 30 30 < th dose dependent rect. 23 23
83 869.95 temperature 10 90 > th dose dependent no NA NA
86 870.04 temperature 30 30 < th dose dependent rect. 13 23
87 870.12 radiation 30 4320 > th dose independent rect. 15 2
116 870.68 temperature 10 4320 > th dose dependent rect. 20 7
118 870.73 temperature 30 30 < th dose dependent rect. 3 23
127 870.87 temperature 30 4320 < th dose dependent rect. 20 7
141 871.14 temperature 30 90 < th dose dependent rect. 16 19
198 872.55 temperature 20 4320 > th dose dependent rect. 2 1
210 872.73 temperature 20 90 > th dose dependent rect. 15 23
252 873.64 temperature 20 90 > th dose dependent rect. 23 23
255 873.75 temperature 30 30 < th dose dependent rect. 19 23
302 874.81 temperature 30 4320 < th dose dependent rect. 20 13
322 875.05 temperature 30 4320 < th dose dependent sin 11 NA
351 875.39 temperature 10 4320 > th dose dependent sin 11 NA
397 875.95 temperature 10 4320 > th dose dependent rect. 2 1
440 876.46 temperature 30 4320 < th dose dependent rect. 2 1
490 877.07 temperature 20 30 > th dose dependent rect. 3 23
500 877.22 temperature 25 4320 < th dose independent rect. 18 9
518 877.44 temperature 25 4320 < th dose independent rect. 16 13
535 877.60 temperature 25 4320 < th dose independent rect. 18 11
541 877.73 temperature 25 4320 > th dose independent rect. 18 7
617 878.45 temperature 25 4320 > th dose independent rect. 16 13
631 878.57 temperature 25 4320 > th dose independent rect. 18 11
633 878.61 temperature 25 4320 > th dose independent rect. 18 9
731 879.36 temperature 25 4320 < th dose independent sin 14 NA
787 879.90 temperature 25 4320 > th dose independent sin 14 NA
847 880.31 temperature 30 90 < th dose dependent rect. 13 19
861 880.39 temperature 20 90 > th dose dependent rect. 1 23
901 880.74 temperature 25 4320 < th dose independent rect. 20 2