Os03g0180500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0180500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.49 | 0.344 | 9.4 | -1.47 | 0.738 | -0.135 | -0.626 | -1.72 | -0.121 | 6.67 | 67.01 | 4751 | -- | -- |
| 55.79 | 0.348 | 9.39 | -1.36 | 0.737 | -0.479 | -0.456 | -- | -0.139 | 6.66 | 38.89 | 8908 | -- | -- |
| 54.39 | 0.343 | 9.4 | -1.48 | 0.741 | -0.128 | -- | -1.73 | -0.123 | 6.53 | 67 | 4657 | -- | -- |
| 56.42 | 0.35 | 9.39 | -1.38 | 0.739 | -0.482 | -- | -- | -0.131 | 6.57 | 39 | 8397 | -- | -- |
| 82.18 | 0.422 | 9.39 | -1.55 | -- | -0.402 | -- | -1.38 | -0.106 | -- | 74.75 | 4910 | -- | -- |
| 60.67 | 0.365 | 9.38 | -1.56 | 0.745 | -- | -0.503 | -- | -0.116 | 6.72 | -- | -- | -- | -- |
| 61.27 | 0.367 | 9.38 | -1.57 | 0.745 | -- | -- | -- | -0.115 | 6.6 | -- | -- | -- | -- |
| 84.87 | 0.429 | 9.4 | -1.35 | -- | -0.505 | -- | -- | -0.116 | -- | 37.06 | 7685 | -- | -- |
| 98.29 | 0.462 | 9.36 | -- | 0.718 | -1.05 | -- | -- | -0.0205 | 6.63 | 35.26 | 7668 | -- | -- |
| 90.2 | 0.444 | 9.4 | -1.55 | -- | -- | -- | -- | -0.1 | -- | -- | -- | -- | -- |
| 126.02 | 0.525 | 9.34 | -- | 0.726 | -- | -- | -- | 0.0592 | 6.73 | -- | -- | -- | -- |
| 125.16 | 0.521 | 9.38 | -- | -- | -1.07 | -- | -- | -0.00901 | -- | 38.17 | 7479 | -- | -- |
| 153.53 | 0.578 | 9.36 | -- | -- | -- | -- | -- | 0.0717 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.95 | wind | 3e+00 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 2 | 52.95 | temperature | 1e+01 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 3 | 52.98 | wind | 3e+00 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 9 | 53.11 | wind | 3e+00 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 11 | 53.17 | wind | 3e+00 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 33 | 53.44 | wind | 7e+00 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 34 | 53.46 | precipitation | 1e-01 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 35 | 53.46 | precipitation | 1e-01 | 1440 | > th | dose dependent | rect. | 22 | 2 |
| 36 | 53.47 | humidity | 7e+01 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 41 | 53.55 | precipitation | 1e-01 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 42 | 53.55 | wind | 7e+00 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 45 | 53.55 | precipitation | 1e-01 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 59 | 53.68 | humidity | 7e+01 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 63 | 53.69 | humidity | 6e+01 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 67 | 53.70 | humidity | 7e+01 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 71 | 53.71 | humidity | 7e+01 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 75 | 53.72 | humidity | 7e+01 | 1440 | > th | dose independent | rect. | 4 | 9 |
| 80 | 53.73 | humidity | 7e+01 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 97 | 53.79 | wind | 9e+00 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 105 | 53.84 | humidity | 9e+01 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 134 | 53.96 | temperature | 1e+01 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 145 | 53.98 | humidity | 9e+01 | 720 | < th | dose dependent | rect. | 6 | 8 |
| 148 | 53.99 | humidity | 7e+01 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 188 | 54.09 | wind | 1e+00 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 190 | 54.09 | wind | 1e+00 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 198 | 54.11 | wind | 3e+00 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 221 | 54.16 | humidity | 6e+01 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 224 | 54.17 | wind | 5e+00 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 226 | 54.17 | wind | 5e+00 | 1440 | > th | dose dependent | rect. | 24 | 6 |
| 253 | 54.21 | wind | 5e+00 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 262 | 54.24 | wind | 5e+00 | 1440 | > th | dose independent | rect. | 24 | 3 |
| 268 | 54.25 | wind | 1e+00 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 275 | 54.26 | temperature | 2e+01 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 277 | 54.27 | wind | 5e+00 | 1440 | > th | dose independent | rect. | 24 | 5 |
| 289 | 54.29 | wind | 5e+00 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 290 | 54.29 | humidity | 8e+01 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 323 | 54.32 | humidity | 7e+01 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 326 | 54.33 | wind | 1e+00 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 328 | 54.34 | humidity | 8e+01 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 331 | 54.34 | wind | 1e+00 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 337 | 54.35 | humidity | 8e+01 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 372 | 54.40 | wind | 1e+00 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 381 | 54.41 | humidity | 7e+01 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 422 | 54.43 | humidity | 7e+01 | 270 | < th | dose independent | rect. | 12 | 4 |
| 426 | 54.43 | atmosphere | 1e+03 | 270 | > th | dose independent | rect. | 12 | 18 |
| 473 | 54.48 | humidity | 7e+01 | 1440 | > th | dose independent | sin | 7 | NA |
| 501 | 54.50 | humidity | 7e+01 | 720 | < th | dose independent | sin | 5 | NA |
| 506 | 54.50 | humidity | 9e+01 | 720 | < th | dose dependent | sin | 4 | NA |
| 533 | 54.53 | humidity | 6e+01 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 595 | 54.59 | humidity | 9e+01 | 270 | < th | dose dependent | rect. | 12 | 4 |
| 606 | 54.61 | wind | 7e+00 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 647 | 54.65 | humidity | 5e+01 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 652 | 54.65 | temperature | 2e+01 | 270 | > th | dose independent | rect. | 17 | 8 |
| 660 | 54.66 | humidity | 7e+01 | 1440 | < th | dose independent | sin | 7 | NA |
| 701 | 54.68 | temperature | 2e+01 | 10 | > th | dose independent | rect. | 18 | 19 |
| 703 | 54.68 | humidity | 7e+01 | 4320 | < th | dose dependent | rect. | 12 | 2 |
| 704 | 54.68 | humidity | 7e+01 | 4320 | < th | dose dependent | rect. | 9 | 6 |
| 724 | 54.70 | humidity | 7e+01 | 4320 | < th | dose dependent | rect. | 6 | 10 |
| 783 | 54.74 | wind | 3e+00 | 14400 | < th | dose independent | sin | 8 | NA |
| 795 | 54.74 | humidity | 9e+01 | 270 | < th | dose dependent | rect. | 11 | 6 |
| 861 | 54.78 | humidity | 7e+01 | 4320 | < th | dose dependent | sin | 3 | NA |
| 933 | 54.81 | atmosphere | 1e+03 | 90 | > th | dose independent | rect. | 15 | 18 |
| 974 | 54.83 | temperature | 2e+01 | 10 | > th | dose independent | rect. | 21 | 15 |
| 976 | 54.83 | humidity | 9e+01 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 985 | 54.84 | wind | 3e+00 | 14400 | > th | dose independent | sin | 8 | NA |