Os03g0179900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 rapidly elicited protein 44 (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os03g0179900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 rapidly elicited protein 44 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.64 | 0.52 | 7.72 | -0.549 | 1.55 | -1.04 | 0.986 | -1.15 | -0.0367 | 10.4 | 69.48 | 1161 | -- | -- |
| 125.01 | 0.521 | 7.74 | -0.686 | 1.57 | -1.07 | 0.793 | -- | -0.0647 | 10.4 | 69.85 | 1161 | -- | -- |
| 126.24 | 0.523 | 7.72 | -0.546 | 1.54 | -1.04 | -- | -0.741 | -0.0433 | 10.4 | 69.48 | 1161 | -- | -- |
| 126.97 | 0.525 | 7.75 | -0.66 | 1.62 | -1.14 | -- | -- | -0.134 | 10.3 | 70.31 | 1114 | -- | -- |
| 228.22 | 0.704 | 7.67 | -0.377 | -- | -1.12 | -- | -0.911 | 0.237 | -- | 66 | 4418 | -- | -- |
| 167.21 | 0.606 | 7.73 | -0.445 | 1.27 | -- | 0.537 | -- | 0.00168 | 10 | -- | -- | -- | -- |
| 168.33 | 0.608 | 7.73 | -0.424 | 1.27 | -- | -- | -- | 0.00273 | 9.99 | -- | -- | -- | -- |
| 226.8 | 0.701 | 7.67 | -0.347 | -- | -1.55 | -- | -- | 0.312 | -- | 66 | 4455 | -- | -- |
| 138.11 | 0.547 | 7.73 | -- | 1.64 | -1.06 | -- | -- | -0.0513 | 10.3 | 70 | 1103 | -- | -- |
| 265.67 | 0.762 | 7.76 | -0.439 | -- | -- | -- | -- | 0.00201 | -- | -- | -- | -- | -- |
| 173.07 | 0.615 | 7.72 | -- | 1.27 | -- | -- | -- | 0.0499 | 10 | -- | -- | -- | -- |
| 229.41 | 0.705 | 7.84 | -- | -- | -1.48 | -- | -- | -0.365 | -- | 72 | 8793 | -- | -- |
| 270.76 | 0.768 | 7.75 | -- | -- | -- | -- | -- | 0.0507 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.17 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 3 |
| 4 | 123.92 | humidity | 70.0 | 720 | > th | dose independent | rect. | 15 | 13 |
| 7 | 125.09 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 13 | 125.62 | humidity | 70.0 | 720 | > th | dose independent | rect. | 16 | 18 |
| 15 | 125.78 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 16 | 126.01 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 4 |
| 17 | 126.02 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 20 | 126.43 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 23 | 126.52 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 13 |
| 24 | 126.52 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 26 | 126.55 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 27 | 126.56 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 28 | 126.57 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 40 | 126.64 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 56 | 127.04 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 59 | 127.11 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 61 | 127.11 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 12 |
| 62 | 127.11 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 15 |
| 73 | 127.19 | humidity | 60.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 74 | 127.20 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 79 | 127.27 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 12 | NA |
| 81 | 127.31 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 132 | 127.57 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 151 | 127.69 | humidity | 60.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 169 | 127.87 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 269 | 128.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 8 |
| 270 | 128.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 8 |
| 274 | 128.45 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 275 | 128.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 276 | 128.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 6 |
| 280 | 128.47 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 282 | 128.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 284 | 128.48 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 289 | 128.51 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 294 | 128.52 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 12 | 7 |
| 303 | 128.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 311 | 128.64 | humidity | 70.0 | 720 | < th | dose independent | sin | 15 | NA |
| 318 | 128.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 320 | 128.67 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 321 | 128.67 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 326 | 128.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 356 | 128.73 | humidity | 70.0 | 720 | < th | dose independent | rect. | 15 | 18 |
| 413 | 128.89 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 438 | 128.97 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 496 | 129.08 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 520 | 129.13 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 534 | 129.18 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 20 | NA |
| 535 | 129.18 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 20 | NA |
| 536 | 129.18 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 20 | NA |
| 618 | 129.28 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 2 | 22 |
| 628 | 129.29 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 688 | 129.30 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 18 |
| 708 | 129.32 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 771 | 129.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 12 |
| 810 | 129.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 14 |
| 820 | 129.56 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 23 | NA |
| 835 | 129.58 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 21 |
| 836 | 129.59 | humidity | 70.0 | 720 | > th | dose independent | sin | 14 | NA |
| 846 | 129.61 | humidity | 70.0 | 1440 | > th | dose independent | sin | 12 | NA |
| 873 | 129.67 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 889 | 129.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 969 | 129.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 991 | 129.85 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 17 | NA |