Os03g0179400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 induced kinase 1.
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Os03g0179400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 induced kinase 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.56 | 0.363 | 10.3 | 0.772 | 1.63 | 0.511 | -0.0226 | 0.592 | 0.536 | 5.45 | 23.24 | 28194 | -- | -- |
| 59.97 | 0.361 | 10.3 | 0.833 | 1.65 | 0.587 | -0.087 | -- | 0.58 | 5.41 | 22.16 | 26873 | -- | -- |
| 59.56 | 0.359 | 10.3 | 0.772 | 1.63 | 0.512 | -- | 0.592 | 0.536 | 5.45 | 23.25 | 28188 | -- | -- |
| 59.95 | 0.361 | 10.3 | 0.836 | 1.65 | 0.586 | -- | -- | 0.58 | 5.41 | 22.15 | 26873 | -- | -- |
| 198.12 | 0.656 | 10.3 | 0.76 | -- | 0.497 | -- | 0.686 | 0.574 | -- | 27 | 28097 | -- | -- |
| 69.78 | 0.392 | 10.3 | 0.904 | 1.65 | -- | -0.0206 | -- | 0.414 | 5.5 | -- | -- | -- | -- |
| 69.78 | 0.391 | 10.3 | 0.904 | 1.65 | -- | -- | -- | 0.415 | 5.5 | -- | -- | -- | -- |
| 197.32 | 0.654 | 10.3 | 0.908 | -- | 0.616 | -- | -- | 0.585 | -- | 21.74 | 28069 | -- | -- |
| 70.89 | 0.392 | 10.3 | -- | 1.6 | 0.825 | -- | -- | 0.407 | 5.72 | 49.33 | 28988 | -- | -- |
| 210.96 | 0.679 | 10.3 | 0.959 | -- | -- | -- | -- | 0.455 | -- | -- | -- | -- | -- |
| 91.33 | 0.447 | 10.3 | -- | 1.66 | -- | -- | -- | 0.314 | 5.48 | -- | -- | -- | -- |
| 209.66 | 0.674 | 10.3 | -- | -- | 0.834 | -- | -- | 0.439 | -- | 48.85 | 28070 | -- | -- |
| 235.21 | 0.716 | 10.4 | -- | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.82 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 2 | 58.85 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 4 | 59.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 7 | 59.44 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 8 | 59.46 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 10 | 59.66 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 15 | 59.78 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 18 | 59.84 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 22 | 59.97 | radiation | 10 | 43200 | < th | dose dependent | rect. | 14 | 3 |
| 27 | 60.02 | radiation | 10 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 49 | 60.16 | radiation | 10 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 52 | 60.18 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 67 | 60.20 | radiation | 10 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 87 | 60.24 | radiation | 10 | 43200 | < th | dose dependent | rect. | 10 | 8 |
| 99 | 60.26 | radiation | 10 | 43200 | > th | dose independent | sin | 15 | NA |
| 119 | 60.31 | radiation | 10 | 43200 | < th | dose dependent | sin | 18 | NA |
| 144 | 60.34 | radiation | 10 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 145 | 60.34 | radiation | 30 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 146 | 60.34 | radiation | 20 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 150 | 60.35 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 151 | 60.35 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 155 | 60.36 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 196 | 60.41 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 203 | 60.42 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 222 | 60.47 | radiation | 30 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 224 | 60.48 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 265 | 60.57 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 266 | 60.57 | humidity | 60 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 267 | 60.57 | humidity | 50 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 285 | 60.59 | temperature | 25 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 288 | 60.60 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 289 | 60.60 | temperature | 30 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 290 | 60.60 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 293 | 60.61 | radiation | 20 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 295 | 60.62 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 310 | 60.62 | temperature | 30 | 43200 | > th | dose dependent | rect. | 17 | 17 |
| 321 | 60.65 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 325 | 60.65 | temperature | 25 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 335 | 60.67 | temperature | 30 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 340 | 60.67 | temperature | 30 | 43200 | > th | dose dependent | sin | 10 | NA |
| 345 | 60.68 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 392 | 60.69 | temperature | 30 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 398 | 60.69 | temperature | 30 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 402 | 60.69 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 404 | 60.70 | temperature | 30 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 405 | 60.70 | temperature | 30 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 407 | 60.70 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 411 | 60.70 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 412 | 60.70 | radiation | 10 | 14400 | < th | dose independent | rect. | 21 | 10 |
| 425 | 60.71 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 455 | 60.73 | temperature | 25 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 483 | 60.74 | temperature | 25 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 495 | 60.75 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 515 | 60.76 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 522 | 60.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 528 | 60.77 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 537 | 60.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 558 | 60.78 | temperature | 30 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 561 | 60.78 | temperature | 25 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 632 | 60.80 | temperature | 25 | 43200 | > th | dose dependent | rect. | 19 | 10 |
| 643 | 60.81 | temperature | 30 | 43200 | > th | dose independent | sin | 10 | NA |
| 672 | 60.82 | temperature | 30 | 43200 | < th | dose independent | sin | 10 | NA |
| 679 | 60.82 | temperature | 25 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 729 | 60.83 | temperature | 30 | 43200 | > th | dose dependent | sin | 2 | NA |
| 733 | 60.83 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 739 | 60.83 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 9 |
| 871 | 60.84 | temperature | 30 | 43200 | > th | dose dependent | sin | 19 | NA |
| 973 | 60.86 | radiation | 40 | 14400 | > th | dose dependent | rect. | 10 | 3 |