Os03g0179200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0179200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.02 | 0.319 | 3.28 | 0.193 | 0.216 | 0.271 | -0.247 | 1.28 | -0.0685 | 7.26 | 91 | 5897 | -- | -- |
| 48.14 | 0.323 | 3.28 | 0.105 | 0.219 | 0.35 | -0.283 | -- | -0.101 | 6.84 | 92.41 | 4466 | -- | -- |
| 46.18 | 0.317 | 3.28 | 0.185 | 0.215 | 0.27 | -- | 1.29 | -0.071 | 7.32 | 91 | 5911 | -- | -- |
| 48.33 | 0.324 | 3.28 | 0.0974 | 0.22 | 0.344 | -- | -- | -0.106 | 7.14 | 105 | 4446 | -- | -- |
| 48.62 | 0.325 | 3.29 | 0.193 | -- | 0.27 | -- | 1.27 | -0.0665 | -- | 91 | 5841 | -- | -- |
| 49.59 | 0.33 | 3.27 | 0.0858 | 0.214 | -- | -0.265 | -- | -0.0332 | 7.18 | -- | -- | -- | -- |
| 49.77 | 0.33 | 3.27 | 0.0808 | 0.213 | -- | -- | -- | -0.0324 | 7.38 | -- | -- | -- | -- |
| 50.77 | 0.332 | 3.29 | 0.1 | -- | 0.339 | -- | -- | -0.1 | -- | 106.2 | 4317 | -- | -- |
| 48.58 | 0.325 | 3.28 | -- | 0.22 | 0.334 | -- | -- | -0.115 | 7.14 | 108.8 | 4431 | -- | -- |
| 52.19 | 0.338 | 3.27 | 0.0843 | -- | -- | -- | -- | -0.0289 | -- | -- | -- | -- | -- |
| 49.94 | 0.331 | 3.27 | -- | 0.214 | -- | -- | -- | -0.0414 | 7.36 | -- | -- | -- | -- |
| 51.03 | 0.333 | 3.29 | -- | -- | 0.329 | -- | -- | -0.109 | -- | 112.3 | 4304 | -- | -- |
| 52.38 | 0.338 | 3.27 | -- | -- | -- | -- | -- | -0.0382 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.59 | radiation | 10.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 2 | 43.89 | humidity | 80.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 6 | 44.20 | humidity | 80.0 | 10 | < th | dose independent | rect. | 23 | 9 |
| 26 | 44.84 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 34 | 45.07 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 37 | 45.22 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 42 | 45.36 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 45 | 45.42 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 66 | 45.65 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 23 | 11 |
| 75 | 45.76 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 81 | 45.77 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 85 | 45.78 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 101 | 45.81 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 106 | 45.92 | temperature | 25.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 111 | 45.99 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 129 | 46.07 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 133 | 46.11 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 136 | 46.13 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 137 | 46.13 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 140 | 46.16 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 146 | 46.18 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 3 | 12 |
| 148 | 46.18 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 161 | 46.19 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 2 |
| 162 | 46.19 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 167 | 46.20 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 8 | 23 |
| 168 | 46.20 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 175 | 46.21 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 182 | 46.21 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 23 | 17 |
| 209 | 46.24 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 213 | 46.24 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 218 | 46.25 | humidity | 70.0 | 4320 | > th | dose independent | sin | 4 | NA |
| 223 | 46.25 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 4 | NA |
| 411 | 46.31 | humidity | 90.0 | 4320 | < th | dose dependent | sin | 4 | NA |
| 412 | 46.31 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 433 | 46.32 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 483 | 46.34 | humidity | 70.0 | 4320 | < th | dose independent | sin | 3 | NA |
| 539 | 46.35 | humidity | 80.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 602 | 46.37 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 611 | 46.37 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 660 | 46.39 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 662 | 46.39 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 665 | 46.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 669 | 46.39 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 678 | 46.39 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 679 | 46.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 717 | 46.39 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 760 | 46.40 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 787 | 46.41 | humidity | 80.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 888 | 46.45 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 916 | 46.46 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 924 | 46.46 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 927 | 46.46 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 951 | 46.47 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 953 | 46.47 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 954 | 46.47 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 957 | 46.47 | humidity | 90.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 958 | 46.47 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 960 | 46.47 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 962 | 46.47 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 967 | 46.47 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 982 | 46.47 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 988 | 46.47 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 993 | 46.47 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 994 | 46.47 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 999 | 46.47 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |