Os03g0179000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tubulin-tyrosine ligase family protein.
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Os03g0179000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tubulin-tyrosine ligase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.76 | 0.523 | 9.45 | 2.16 | 2.35 | -1.21 | 1.43 | -0.641 | 0.233 | 18.7 | 39.11 | 166 | -- | -- |
| 123.92 | 0.518 | 9.45 | 2.14 | 2.34 | -1.13 | 1.36 | -- | 0.226 | 18.7 | 37.82 | 170 | -- | -- |
| 128.87 | 0.529 | 9.44 | 2.14 | 2.35 | -1.2 | -- | -0.609 | 0.238 | 18.6 | 39.02 | 169 | -- | -- |
| 129.04 | 0.529 | 9.44 | 2.13 | 2.34 | -1.12 | -- | -- | 0.235 | 18.6 | 37.44 | 170 | -- | -- |
| 250.1 | 0.737 | 9.47 | 1.83 | -- | -2.21 | -- | 0.113 | -0.0504 | -- | 37.27 | 680 | -- | -- |
| 144.78 | 0.564 | 9.43 | 2.1 | 2.45 | -- | 1.3 | -- | 0.291 | 18.1 | -- | -- | -- | -- |
| 148.88 | 0.571 | 9.43 | 2.08 | 2.46 | -- | -- | -- | 0.296 | 18.1 | -- | -- | -- | -- |
| 157 | 0.584 | 9.41 | 1.84 | -- | -3.28 | -- | -- | 0.227 | -- | 1.87 | 768 | -- | -- |
| 240.31 | 0.722 | 9.52 | -- | 2.26 | -0.954 | -- | -- | -0.0249 | 18.7 | 30.16 | 220 | -- | -- |
| 461.33 | 1 | 9.38 | 2.02 | -- | -- | -- | -- | 0.241 | -- | -- | -- | -- | -- |
| 263.42 | 0.759 | 9.48 | -- | 2.43 | -- | -- | -- | 0.0642 | 18.2 | -- | -- | -- | -- |
| 246.65 | 0.731 | 9.44 | -- | -- | -3.26 | -- | -- | 0.00996 | -- | 0.1394 | 782 | -- | -- |
| 568.44 | 1.11 | 9.43 | -- | -- | -- | -- | -- | 0.0179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.34 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 8 |
| 2 | 115.46 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 3 |
| 3 | 115.79 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 12 |
| 8 | 116.25 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 10 | 116.60 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 14 |
| 22 | 117.59 | radiation | 40.0 | 90 | < th | dose independent | rect. | 6 | 17 |
| 23 | 117.59 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 10 |
| 24 | 117.70 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 5 |
| 34 | 118.41 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 13 |
| 41 | 118.74 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 3 |
| 48 | 118.95 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 52 | 118.99 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 58 | 119.14 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 14 |
| 61 | 119.27 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 74 | 119.61 | temperature | 25.0 | 30 | > th | dose independent | rect. | 23 | 10 |
| 81 | 119.76 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 84 | 119.90 | humidity | 70.0 | 90 | > th | dose independent | rect. | 6 | 5 |
| 88 | 120.03 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 89 | 120.03 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 18 |
| 106 | 120.33 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 10 |
| 120 | 120.52 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 22 | 8 |
| 126 | 120.61 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 127 | 120.64 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 130 | 120.68 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 20 |
| 131 | 120.68 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 137 | 120.78 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 7 |
| 142 | 120.82 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 21 | 7 |
| 143 | 120.83 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 13 |
| 144 | 120.83 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 16 |
| 155 | 121.07 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 8 |
| 162 | 121.11 | radiation | 30.0 | 270 | < th | dose independent | rect. | 11 | 22 |
| 168 | 121.15 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 11 |
| 181 | 121.28 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 22 |
| 190 | 121.38 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 19 |
| 195 | 121.40 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 203 | 121.45 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 16 |
| 213 | 121.47 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 223 | 121.54 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 226 | 121.55 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 20 | 10 |
| 229 | 121.57 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 233 | 121.58 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 10 |
| 251 | 121.75 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 254 | 121.78 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 12 |
| 265 | 121.89 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 285 | 122.02 | wind | 7.0 | 30 | < th | dose independent | rect. | 9 | 21 |
| 321 | 122.22 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 343 | 122.33 | humidity | 70.0 | 30 | > th | dose independent | rect. | 6 | 14 |
| 362 | 122.43 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 22 | 8 |
| 371 | 122.51 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 373 | 122.53 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 378 | 122.56 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 9 | 6 |
| 380 | 122.57 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 6 | 9 |
| 384 | 122.59 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 22 | 5 |
| 385 | 122.59 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 395 | 122.66 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 405 | 122.73 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 429 | 122.83 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 449 | 122.91 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 454 | 122.93 | humidity | 70.0 | 30 | > th | dose independent | rect. | 6 | 16 |
| 458 | 122.95 | radiation | 40.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 460 | 122.95 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 6 | 11 |
| 472 | 123.02 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 521 | 123.23 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 14 | 9 |
| 541 | 123.35 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 9 |
| 550 | 123.37 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 22 | 17 |
| 566 | 123.46 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 578 | 123.50 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 579 | 123.51 | radiation | 40.0 | 270 | < th | dose independent | sin | 6 | NA |
| 591 | 123.56 | radiation | 1.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 602 | 123.59 | radiation | 40.0 | 270 | < th | dose independent | sin | 8 | NA |
| 637 | 123.71 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 642 | 123.72 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 698 | 123.97 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 3 |
| 705 | 123.99 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 21 |
| 742 | 124.09 | humidity | 80.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 774 | 124.20 | wind | 9.0 | 30 | < th | dose dependent | rect. | 6 | 3 |
| 806 | 124.28 | wind | 5.0 | 30 | < th | dose independent | rect. | 6 | 3 |
| 843 | 124.36 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 846 | 124.36 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 847 | 124.36 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
| 850 | 124.36 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 861 | 124.39 | humidity | 70.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 880 | 124.45 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 3 |
| 907 | 124.51 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 912 | 124.53 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 914 | 124.53 | temperature | 30.0 | 30 | < th | dose independent | rect. | 6 | 3 |
| 915 | 124.53 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 917 | 124.53 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 918 | 124.53 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 6 | 3 |
| 919 | 124.53 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 21 |
| 934 | 124.56 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 3 |
| 936 | 124.56 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 3 |
| 945 | 124.58 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 974 | 124.69 | temperature | 20.0 | 30 | > th | dose independent | rect. | 6 | 18 |
| 986 | 124.71 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 4 | 11 |