Os03g0178800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0178800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.33 | 0.475 | 6.63 | 0.425 | 1.8 | -1.15 | 0.141 | -0.737 | 0.248 | 20.3 | 1010 | 5122 | -- | -- |
| 103.61 | 0.474 | 6.62 | 0.613 | 1.81 | -1.11 | 0.183 | -- | 0.236 | 20.3 | 1010 | 5066 | -- | -- |
| 102.39 | 0.471 | 6.63 | 0.419 | 1.8 | -1.15 | -- | -0.745 | 0.247 | 20.3 | 1010 | 5118 | -- | -- |
| 103.72 | 0.474 | 6.62 | 0.609 | 1.8 | -1.11 | -- | -- | 0.237 | 20.3 | 1010 | 5066 | -- | -- |
| 281.84 | 0.782 | 6.58 | 0.449 | -- | -1.24 | -- | -0.743 | 0.25 | -- | 1010 | 5363 | -- | -- |
| 140.92 | 0.557 | 6.65 | 0.26 | 1.83 | -- | 0.127 | -- | 0.133 | 20.2 | -- | -- | -- | -- |
| 140.97 | 0.556 | 6.65 | 0.257 | 1.83 | -- | -- | -- | 0.134 | 20.2 | -- | -- | -- | -- |
| 283.25 | 0.784 | 6.56 | 0.616 | -- | -1.19 | -- | -- | 0.283 | -- | 1010 | 5361 | -- | -- |
| 110.06 | 0.489 | 6.63 | -- | 1.81 | -0.919 | -- | -- | 0.209 | 20.3 | 1009 | 9765 | -- | -- |
| 325.54 | 0.843 | 6.6 | 0.242 | -- | -- | -- | -- | 0.112 | -- | -- | -- | -- | -- |
| 142.7 | 0.559 | 6.65 | -- | 1.83 | -- | -- | -- | 0.105 | 20.2 | -- | -- | -- | -- |
| 290.54 | 0.794 | 6.58 | -- | -- | -0.974 | -- | -- | 0.255 | -- | 1009 | 10180 | -- | -- |
| 327.08 | 0.844 | 6.6 | -- | -- | -- | -- | -- | 0.0851 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.64 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 3 | 97.20 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 13 | 99.35 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 15 | 99.46 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 23 | 100.05 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 25 | 100.18 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 29 | 100.34 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 44 | 100.74 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 50 | 100.86 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 65 | 101.08 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 78 | 101.37 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 98 | 101.62 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 18 |
| 123 | 101.89 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 128 | 102.01 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 134 | 102.11 | radiation | 30.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 137 | 102.13 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 162 | 102.22 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 167 | 102.23 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 174 | 102.25 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 175 | 102.25 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 182 | 102.30 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 197 | 102.39 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 14 | 20 |
| 237 | 102.55 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 284 | 102.71 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 305 | 102.75 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 311 | 102.79 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 8 |
| 315 | 102.79 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 14 |
| 350 | 102.92 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 369 | 103.00 | radiation | 40.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 374 | 103.02 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 378 | 103.02 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 388 | 103.06 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 397 | 103.08 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 404 | 103.11 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 406 | 103.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 408 | 103.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 411 | 103.13 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 412 | 103.13 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 413 | 103.13 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 424 | 103.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 431 | 103.17 | radiation | 10.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 438 | 103.18 | wind | 9.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 461 | 103.26 | wind | 9.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 479 | 103.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 483 | 103.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 500 | 103.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 540 | 103.43 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 611 | 103.58 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 24 | 20 |
| 613 | 103.59 | radiation | 10.0 | 14400 | < th | dose independent | no | NA | NA |
| 618 | 103.59 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 662 | 103.60 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 21 | NA |
| 685 | 103.63 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 22 | 12 |
| 711 | 103.67 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 5 | 3 |
| 720 | 103.70 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 729 | 103.72 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 749 | 103.75 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 773 | 103.81 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 5 | 6 |
| 775 | 103.81 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 796 | 103.82 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 1 | 5 |
| 805 | 103.84 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 2 | 7 |
| 806 | 103.85 | atmosphere | 1010.0 | 4320 | < th | dose independent | sin | 7 | NA |
| 822 | 103.86 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 846 | 103.89 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 886 | 103.94 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 891 | 103.94 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 918 | 103.96 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 5 | 3 |
| 920 | 103.96 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 5 | 6 |
| 952 | 103.98 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 22 | 12 |
| 957 | 103.99 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 2 | 8 |