Os03g0178200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function YGGT family protein.
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Os03g0178200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function YGGT family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.86 | 0.375 | 13.7 | 0.586 | 1.52 | -0.241 | -1.02 | 2.07 | -0.347 | 20.1 | 19.1 | 1834 | -- | -- |
| 67.52 | 0.383 | 13.7 | 0.482 | 1.5 | -0.571 | -1.13 | -- | -0.371 | 20.2 | 14.3 | 13295 | -- | -- |
| 66.63 | 0.38 | 13.7 | 0.604 | 1.52 | -0.267 | -- | 2.12 | -0.357 | 20.1 | 19.1 | 1668 | -- | -- |
| 67.79 | 0.383 | 13.7 | 0.674 | 1.46 | -0.877 | -- | -- | -0.339 | 20.1 | 13.2 | 10311 | -- | -- |
| 191.73 | 0.648 | 13.7 | 0.402 | -- | -0.486 | -- | 0.972 | -0.41 | -- | 19.1 | 1668 | -- | -- |
| 75.53 | 0.407 | 13.8 | 0.109 | 1.53 | -- | -1.02 | -- | -0.501 | 20.1 | -- | -- | -- | -- |
| 78.66 | 0.415 | 13.8 | 0.137 | 1.53 | -- | -- | -- | -0.502 | 20.2 | -- | -- | -- | -- |
| 193.18 | 0.647 | 13.7 | 0.689 | -- | -1 | -- | -- | -0.376 | -- | 12.5 | 10159 | -- | -- |
| 73.41 | 0.399 | 13.8 | -- | 1.53 | -0.669 | -- | -- | -0.478 | 20.2 | 16.1 | 5882 | -- | -- |
| 207.31 | 0.673 | 13.7 | 0.125 | -- | -- | -- | -- | -0.52 | -- | -- | -- | -- | -- |
| 79.16 | 0.416 | 13.8 | -- | 1.53 | -- | -- | -- | -0.517 | 20.2 | -- | -- | -- | -- |
| 201.11 | 0.66 | 13.7 | -- | -- | -0.711 | -- | -- | -0.508 | -- | 15.5 | 5773 | -- | -- |
| 207.72 | 0.673 | 13.7 | -- | -- | -- | -- | -- | -0.534 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.92 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 3 | 60.82 | radiation | 30 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 6 | 61.04 | radiation | 1 | 4320 | < th | dose independent | rect. | 24 | 5 |
| 8 | 61.28 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 14 | 61.91 | humidity | 80 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 16 | 62.01 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 12 |
| 23 | 62.38 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 14 |
| 24 | 62.42 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 26 | 62.53 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 29 | 62.57 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 44 | 62.78 | wind | 7 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 53 | 62.87 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 55 | 62.90 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 72 | 63.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 79 | 63.12 | humidity | 70 | 43200 | > th | dose dependent | sin | 13 | NA |
| 94 | 63.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 96 | 63.26 | wind | 5 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 108 | 63.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 4 |
| 110 | 63.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 5 |
| 120 | 63.32 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 125 | 63.35 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 126 | 63.35 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 21 |
| 130 | 63.36 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 139 | 63.38 | wind | 5 | 14400 | > th | dose dependent | rect. | 19 | 14 |
| 141 | 63.39 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 154 | 63.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 198 | 63.49 | wind | 5 | 14400 | > th | dose dependent | rect. | 19 | 10 |
| 203 | 63.50 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 20 |
| 213 | 63.53 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 217 | 63.54 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 219 | 63.55 | wind | 7 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 224 | 63.56 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 226 | 63.56 | wind | 7 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 235 | 63.58 | radiation | 20 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 248 | 63.61 | wind | 7 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 250 | 63.61 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 264 | 63.62 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 272 | 63.63 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 10 |
| 273 | 63.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 278 | 63.64 | temperature | 20 | 14400 | > th | dose independent | rect. | 12 | 13 |
| 279 | 63.64 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 13 |
| 306 | 63.68 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 326 | 63.70 | humidity | 90 | 14400 | > th | dose dependent | sin | 1 | NA |
| 335 | 63.71 | temperature | 20 | 14400 | > th | dose independent | sin | 18 | NA |
| 337 | 63.71 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 345 | 63.71 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 352 | 63.72 | temperature | 20 | 14400 | < th | dose independent | sin | 18 | NA |
| 358 | 63.72 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 363 | 63.73 | wind | 7 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 386 | 63.75 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 403 | 63.76 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 440 | 63.79 | wind | 5 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 451 | 63.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 16 |
| 464 | 63.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 18 |
| 478 | 63.82 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 497 | 63.83 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 18 |
| 517 | 63.85 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 4 |
| 580 | 63.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 590 | 63.90 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 617 | 63.92 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 631 | 63.93 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 635 | 63.93 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 8 |
| 655 | 63.94 | radiation | 20 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 708 | 63.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 709 | 63.98 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 731 | 63.99 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 741 | 64.00 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 747 | 64.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 811 | 64.04 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 18 |
| 842 | 64.06 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 848 | 64.07 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 890 | 64.09 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 914 | 64.11 | temperature | 15 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 942 | 64.13 | humidity | 90 | 14400 | > th | dose independent | sin | 4 | NA |
| 980 | 64.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 16 |
| 991 | 64.15 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 20 |
| 998 | 64.16 | humidity | 70 | 14400 | < th | dose independent | rect. | 21 | 1 |