Os03g0177300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0177300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.02 | 0.235 | 11.7 | 0.824 | 0.475 | -0.898 | 0.36 | 1.34 | 0.374 | 5.14 | 18.85 | 1746 | -- | -- |
| 26.52 | 0.24 | 11.7 | 0.528 | 0.572 | -0.962 | 0.279 | -- | 0.279 | 4.76 | 12.65 | 2544 | -- | -- |
| 25.35 | 0.234 | 11.7 | 0.818 | 0.478 | -0.898 | -- | 1.32 | 0.37 | 5.16 | 18.8 | 1743 | -- | -- |
| 26.75 | 0.241 | 11.7 | 0.591 | 0.559 | -1.01 | -- | -- | 0.278 | 4.86 | 13.1 | 3916 | -- | -- |
| 36.67 | 0.282 | 11.7 | 0.807 | -- | -0.918 | -- | 1.26 | 0.373 | -- | 18.93 | 1887 | -- | -- |
| 44.67 | 0.313 | 11.8 | 0.143 | 0.519 | -- | 0.327 | -- | 0.083 | 5.36 | -- | -- | -- | -- |
| 44.94 | 0.314 | 11.8 | 0.144 | 0.522 | -- | -- | -- | 0.0815 | 5.37 | -- | -- | -- | -- |
| 38.33 | 0.288 | 11.7 | 0.515 | -- | -0.968 | -- | -- | 0.298 | -- | 17.42 | 1897 | -- | -- |
| 32.55 | 0.266 | 11.8 | -- | 0.558 | -0.767 | -- | -- | 0.2 | 4.64 | 8.656 | 2382 | -- | -- |
| 59.12 | 0.359 | 11.8 | 0.161 | -- | -- | -- | -- | 0.0944 | -- | -- | -- | -- | -- |
| 45.48 | 0.315 | 11.8 | -- | 0.524 | -- | -- | -- | 0.0655 | 5.36 | -- | -- | -- | -- |
| 32.73 | 0.266 | 11.8 | -- | -- | -1.06 | -- | -- | 0.225 | -- | 18.65 | 365 | -- | -- |
| 59.81 | 0.361 | 11.8 | -- | -- | -- | -- | -- | 0.0765 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.78 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 4 | 24.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 8 | 24.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 11 | 24.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 12 | 24.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 14 | 24.45 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 18 | 24.48 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 29 | 24.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 60 | 24.90 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 61 | 24.91 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 70 | 24.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 76 | 25.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 79 | 25.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 133 | 25.19 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 14 |
| 147 | 25.22 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 8 |
| 175 | 25.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 177 | 25.26 | temperature | 20 | 4320 | > th | dose dependent | sin | 21 | NA |
| 214 | 25.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 219 | 25.30 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 248 | 25.32 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 249 | 25.32 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 262 | 25.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 281 | 25.35 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 307 | 25.37 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 370 | 25.42 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 408 | 25.44 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 435 | 25.46 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 458 | 25.47 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 460 | 25.47 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 473 | 25.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 23 |
| 490 | 25.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 494 | 25.49 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 506 | 25.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 507 | 25.50 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 611 | 25.56 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 701 | 25.61 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 780 | 25.65 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 7 |
| 827 | 25.68 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 846 | 25.69 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 912 | 25.72 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 1 |