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Os03g0177000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GCN5-related N-acetyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0236) R2 : 0.741
β1 : -1.63 (0.0867) R2dD : 0.217 R2D : 0.147
β2 : 3.12 (0.107) R2dC : 1.8 R2C : -0.176
β3 : 2.48 (0.134) R2dE : 0.74 R2E : -1.25
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0334 (0.0513) R2dN8 : 0.000323 R2N8 : 0.00518
σ : 0.435
deviance : 87.19
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C
peak time of C : 1.19
E
wheather : temperature
threshold : 5.031
memory length : 317
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.72
open length of G : 16.7

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
84.15 0.431 10.7 -1.74 3.11 2.45 -1.35 -0.828 0.0101 1.21 4.542 307 1.83 16.8
84.43 0.428 10.7 -1.65 3.08 2.4 -0.871 -- 0.0322 1.23 4.509 310 1.83 16.6
85.76 0.431 10.6 -1.58 3.07 2.4 -- 0.879 0.0573 1.2 4.968 313 1.78 16.7
87.19 0.435 10.7 -1.63 3.12 2.48 -- -- 0.0334 1.19 5.031 317 1.72 16.7
143.85 0.559 10.7 -1.5 -- 2.36 -- 1.7 0.0178 -- 13.28 783 12 14.9
146.67 0.568 10.6 -1.37 1.42 -- -1.06 -- 0.267 0.775 -- -- -- --
151.42 0.576 10.6 -1.33 1.42 -- -- -- 0.273 0.682 -- -- -- --
108.54 0.485 10.7 -1.8 -- 2.49 -- -- -0.0733 -- 5.493 497 12.1 18.7
153.26 0.577 10.6 -- 3.16 2.18 -- -- 0.276 0.91 -5.943 295 2.1 16.2
278.18 0.779 10.6 -1.28 -- -- -- -- 0.298 -- -- -- -- --
197.76 0.658 10.6 -- 1.4 -- -- -- 0.421 0.637 -- -- -- --
163.64 0.596 10.6 -- -- 1.76 -- -- 0.277 -- -5.48 221 15 16
321.07 0.836 10.5 -- -- -- -- -- 0.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.32 temperature 10.0 270 > th dose dependent rect. 2 17
29 95.60 temperature 30.0 270 < th dose dependent rect. 7 18
33 96.04 temperature 10.0 270 > th dose dependent rect. 24 8
66 99.48 temperature 10.0 270 > th dose dependent rect. 13 18
69 99.69 temperature 30.0 720 < th dose dependent rect. 19 16
85 100.27 temperature 10.0 270 > th dose dependent rect. 11 22
86 100.44 temperature 30.0 720 < th dose dependent sin 9 NA
92 100.52 humidity 50.0 270 > th dose independent rect. 8 16
113 100.94 humidity 70.0 270 > th dose independent rect. 18 8
117 101.09 temperature 30.0 270 < th dose independent rect. 18 8
120 101.13 radiation 30.0 270 < th dose independent rect. 24 8
131 101.44 temperature 15.0 720 > th dose dependent rect. 21 16
134 101.57 atmosphere 1010.0 270 < th dose independent rect. 1 18
135 101.57 radiation 1.0 270 < th dose dependent rect. 18 8
138 101.63 radiation 30.0 10 < th dose dependent rect. 3 17
163 101.99 radiation 1.0 270 < th dose independent rect. 18 8
175 102.09 humidity 70.0 270 > th dose independent rect. 24 8
181 102.18 radiation 40.0 270 < th dose dependent rect. 24 8
187 102.26 wind 7.0 270 < th dose independent rect. 24 8
189 102.28 radiation 20.0 30 < th dose independent rect. 3 17
190 102.28 temperature 15.0 720 > th dose dependent rect. 16 21
195 102.32 temperature 15.0 720 > th dose dependent sin 7 NA
218 102.52 atmosphere 1015.0 270 < th dose independent rect. 24 8
222 102.54 temperature 10.0 270 > th dose independent rect. 24 8
224 102.54 temperature 30.0 270 < th dose independent rect. 24 8
225 102.54 humidity 50.0 270 > th dose independent rect. 24 8
227 102.54 atmosphere 995.0 270 > th dose independent rect. 24 8
228 102.54 temperature 10.0 270 > th dose independent rect. 8 16
244 102.70 temperature 30.0 270 < th dose independent rect. 7 18
253 102.73 temperature 30.0 270 < th dose independent rect. 20 16
260 102.83 atmosphere 1010.0 270 < th dose independent rect. 12 8
264 102.85 precipitation 0.1 270 < th dose independent rect. 24 8
266 102.85 precipitation 0.1 270 < th dose dependent rect. 24 8
274 102.91 temperature 10.0 270 > th dose dependent rect. 12 8
355 103.28 temperature 10.0 270 > th dose independent rect. 12 8
357 103.28 wind 9.0 270 < th dose independent rect. 2 16
358 103.28 temperature 10.0 270 > th dose independent rect. 20 16
359 103.28 atmosphere 995.0 270 > th dose independent rect. 20 16
367 103.31 atmosphere 995.0 270 > th dose independent rect. 18 8
377 103.35 precipitation 0.1 270 < th dose independent rect. 8 16
378 103.35 precipitation 0.1 270 < th dose dependent rect. 8 16
389 103.42 precipitation 0.1 270 < th dose independent rect. 12 8
390 103.42 precipitation 0.1 270 < th dose independent rect. 20 16
392 103.42 precipitation 0.1 270 < th dose dependent rect. 12 8
393 103.42 precipitation 0.1 270 < th dose dependent rect. 20 16
395 103.43 wind 1.0 270 > th dose independent rect. 12 8
401 103.47 wind 9.0 270 < th dose independent rect. 12 8
417 103.51 atmosphere 995.0 270 > th dose dependent rect. 7 17
455 103.69 temperature 10.0 270 > th dose independent rect. 18 8
457 103.69 radiation 20.0 270 < th dose independent rect. 18 8
460 103.69 temperature 10.0 270 > th dose independent rect. 2 16
474 103.73 temperature 10.0 270 > th dose independent rect. 13 6
478 103.73 temperature 10.0 270 > th dose independent rect. 19 18
479 103.73 atmosphere 995.0 270 > th dose independent rect. 19 18
493 103.78 precipitation 0.1 270 < th dose independent rect. 13 6
494 103.78 precipitation 0.1 270 < th dose dependent rect. 13 6
497 103.79 wind 9.0 270 < th dose independent rect. 18 8
525 103.89 wind 9.0 270 < th dose independent rect. 20 16
529 103.91 wind 9.0 270 < th dose independent rect. 13 6
530 103.91 precipitation 0.1 270 < th dose independent rect. 19 18
533 103.91 precipitation 0.1 270 < th dose dependent rect. 19 18
560 103.97 precipitation 0.1 270 < th dose independent rect. 18 8
561 103.97 precipitation 0.1 270 < th dose dependent rect. 18 8
568 104.00 precipitation 0.1 270 < th dose independent rect. 2 16
569 104.00 precipitation 0.1 270 < th dose dependent rect. 2 16
570 104.00 temperature 15.0 720 > th dose dependent rect. 19 23
577 104.02 wind 1.0 270 > th dose independent rect. 19 7
592 104.07 wind 9.0 270 < th dose independent rect. 8 16
624 104.21 temperature 30.0 270 < th dose dependent rect. 7 6
660 104.30 atmosphere 995.0 270 > th dose independent rect. 8 16
669 104.33 temperature 10.0 720 > th dose dependent no NA NA
705 104.42 temperature 25.0 720 < th dose dependent no NA NA
753 104.65 precipitation 0.1 270 < th dose independent rect. 6 8
755 104.65 precipitation 0.1 270 < th dose dependent rect. 6 8
789 104.73 humidity 50.0 270 > th dose dependent rect. 24 8
796 104.78 temperature 10.0 270 > th dose independent rect. 6 8
797 104.78 atmosphere 995.0 270 > th dose independent rect. 6 8
798 104.78 atmosphere 1015.0 270 < th dose independent rect. 6 8
799 104.78 temperature 10.0 270 > th dose independent rect. 14 16
831 104.89 atmosphere 995.0 270 > th dose dependent rect. 7 6
854 104.96 wind 9.0 270 < th dose independent rect. 14 16
860 104.99 precipitation 0.1 270 < th dose independent rect. 14 16
862 104.99 precipitation 0.1 270 < th dose dependent rect. 14 16
863 104.99 temperature 15.0 720 > th dose dependent rect. 8 23
884 105.10 radiation 40.0 90 < th dose dependent rect. 13 20
888 105.12 humidity 50.0 270 > th dose independent rect. 20 16
919 105.24 temperature 25.0 720 < th dose dependent rect. 8 23
949 105.35 wind 9.0 270 < th dose dependent rect. 24 7
1000 105.47 temperature 15.0 720 > th dose dependent rect. 6 23