Os03g0174700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0174700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.85 | 0.743 | 9.19 | 0.111 | 3.05 | 2.46 | 0.64 | 1.22 | -0.728 | 18.9 | 30.19 | 272 | 0.000119 | 8.9 |
| 250.7 | 0.737 | 9.19 | 0.144 | 3.09 | 2.46 | -0.366 | -- | -0.717 | 18.9 | 30.53 | 270 | 0.0126 | 8.92 |
| 250.22 | 0.737 | 9.2 | 0.144 | 3.16 | 2.56 | -- | 0.783 | -0.724 | 18.8 | 30.69 | 276 | 0.0167 | 8.87 |
| 251.04 | 0.738 | 9.19 | 0.149 | 3.1 | 2.45 | -- | -- | -0.718 | 18.9 | 30.61 | 270 | 0.00261 | 8.92 |
| 387.51 | 0.917 | 9.15 | -0.149 | -- | 1.07 | -- | 1.96 | -0.832 | -- | 52.4 | 1313 | 0.151 | 9.07 |
| 298.95 | 0.811 | 9.18 | 2.33e-05 | 1.53 | -- | -0.0913 | -- | -0.863 | 19 | -- | -- | -- | -- |
| 298.97 | 0.81 | 9.18 | 0.00183 | 1.53 | -- | -- | -- | -0.863 | 19 | -- | -- | -- | -- |
| 283.68 | 0.784 | 9.17 | 0.103 | -- | 1.75 | -- | -- | -0.931 | -- | 267.6 | 1244 | 0.983 | 15.6 |
| 251.59 | 0.739 | 9.19 | -- | 3.09 | 2.44 | -- | -- | -0.742 | 18.9 | 30.77 | 271 | 0.00952 | 8.88 |
| 422.78 | 0.961 | 9.15 | -0.0288 | -- | -- | -- | -- | -0.891 | -- | -- | -- | -- | -- |
| 298.97 | 0.809 | 9.18 | -- | 1.53 | -- | -- | -- | -0.863 | 19 | -- | -- | -- | -- |
| 277.22 | 0.775 | 9.15 | -- | -- | 1.81 | -- | -- | -0.875 | -- | 249.6 | 1197 | 0.616 | 16.3 |
| 422.8 | 0.96 | 9.15 | -- | -- | -- | -- | -- | -0.888 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 248.82 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 3 | 250.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 5 | 250.50 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 9 | 251.49 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 12 | 251.65 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 20 | 252.92 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 34 | 255.03 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 40 | 255.37 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 66 | 258.94 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 74 | 259.61 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 80 | 259.95 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 81 | 260.06 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 95 | 260.71 | wind | 3.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 98 | 260.92 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 102 | 261.02 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 103 | 261.06 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 1 | 11 |
| 106 | 261.11 | wind | 3.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 115 | 261.24 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 118 | 261.33 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 120 | 261.39 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 126 | 261.58 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 137 | 261.90 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 138 | 261.91 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 158 | 262.40 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 192 | 263.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 204 | 263.20 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 222 | 263.37 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 224 | 263.41 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 228 | 263.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 259 | 263.88 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 340 | 265.11 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 346 | 265.17 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 348 | 265.17 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 359 | 265.35 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 22 | 17 |
| 360 | 265.37 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 382 | 265.78 | wind | 9.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 390 | 265.86 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 398 | 266.00 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 420 | 266.22 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 4 | 8 |
| 449 | 266.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 450 | 266.53 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 451 | 266.53 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 458 | 266.64 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 459 | 266.64 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 469 | 266.69 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 476 | 266.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 487 | 266.91 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 495 | 266.98 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 510 | 267.12 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 512 | 267.12 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 516 | 267.14 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 12 |
| 522 | 267.17 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 544 | 267.37 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 570 | 267.60 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 579 | 267.65 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 605 | 267.80 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 606 | 267.81 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 609 | 267.82 | humidity | 80.0 | 1440 | < th | dose independent | sin | 5 | NA |
| 613 | 267.86 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 6 |
| 635 | 268.01 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 637 | 268.02 | wind | 9.0 | 14400 | > th | dose independent | sin | 5 | NA |
| 641 | 268.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 643 | 268.04 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 644 | 268.04 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 664 | 268.18 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 689 | 268.33 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 706 | 268.44 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 711 | 268.46 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 712 | 268.46 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 759 | 268.77 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 10 |
| 773 | 268.83 | wind | 3.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 787 | 268.90 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 10 |
| 804 | 268.98 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 805 | 268.98 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 5 | 8 |
| 820 | 269.05 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 831 | 269.11 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 834 | 269.13 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 843 | 269.18 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 8 |
| 892 | 269.43 | humidity | 80.0 | 1440 | > th | dose independent | sin | 5 | NA |