Os03g0174500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Fragment).
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Os03g0174500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.22 | 0.362 | 11.7 | -0.639 | 1.43 | 0.86 | 0.144 | -0.642 | -0.451 | 19.6 | 25.2 | 87 | -- | -- |
| 59.38 | 0.359 | 11.7 | -0.564 | 1.43 | 0.802 | 0.127 | -- | -0.431 | 19.5 | 25.2 | 85 | -- | -- |
| 59.27 | 0.359 | 11.7 | -0.641 | 1.43 | 0.869 | -- | -0.626 | -0.449 | 19.6 | 25.25 | 86 | -- | -- |
| 59.42 | 0.359 | 11.7 | -0.569 | 1.43 | 0.811 | -- | -- | -0.432 | 19.6 | 25.21 | 83 | -- | -- |
| 123.12 | 0.517 | 11.7 | -1.39 | -- | 1.94 | -- | -4.72 | -0.643 | -- | 24.49 | 440 | -- | -- |
| 69.48 | 0.391 | 11.7 | -0.427 | 1.62 | -- | 0.53 | -- | -0.375 | 18.9 | -- | -- | -- | -- |
| 70.19 | 0.392 | 11.7 | -0.436 | 1.62 | -- | -- | -- | -0.373 | 18.9 | -- | -- | -- | -- |
| 128.31 | 0.528 | 11.7 | -0.746 | -- | 1.67 | -- | -- | -0.553 | -- | 24.5 | 404 | -- | -- |
| 67.56 | 0.383 | 11.7 | -- | 1.47 | 0.671 | -- | -- | -0.355 | 19.4 | 25.4 | 86 | -- | -- |
| 208.4 | 0.675 | 11.6 | -0.471 | -- | -- | -- | -- | -0.404 | -- | -- | -- | -- | -- |
| 75.21 | 0.406 | 11.6 | -- | 1.63 | -- | -- | -- | -0.325 | 18.9 | -- | -- | -- | -- |
| 142.72 | 0.556 | 11.6 | -- | -- | 1.55 | -- | -- | -0.46 | -- | 24.61 | 401 | -- | -- |
| 214.25 | 0.683 | 11.6 | -- | -- | -- | -- | -- | -0.352 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.25 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 4 | 53.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 15 | 54.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 14 |
| 22 | 54.41 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 29 | 54.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 31 | 54.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 36 | 54.75 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 40 | 54.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 58 | 55.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 67 | 55.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 96 | 55.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 110 | 55.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 112 | 55.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 12 |
| 205 | 56.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 14 |
| 304 | 56.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 325 | 57.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 422 | 57.46 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 5 |
| 453 | 57.56 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 12 |
| 494 | 57.72 | humidity | 90 | 270 | < th | dose independent | sin | 23 | NA |
| 495 | 57.72 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 496 | 57.72 | humidity | 90 | 720 | < th | dose independent | rect. | 7 | 12 |
| 549 | 57.86 | humidity | 90 | 720 | < th | dose independent | rect. | 8 | 9 |
| 590 | 58.00 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 16 |
| 641 | 58.13 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 12 |
| 648 | 58.14 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 11 |
| 650 | 58.14 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 670 | 58.20 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 671 | 58.20 | humidity | 90 | 720 | < th | dose independent | rect. | 8 | 7 |
| 707 | 58.29 | temperature | 25 | 270 | > th | dose dependent | sin | 4 | NA |
| 782 | 58.51 | humidity | 50 | 90 | > th | dose dependent | rect. | 15 | 21 |
| 783 | 58.52 | temperature | 25 | 90 | < th | dose independent | rect. | 10 | 13 |
| 874 | 58.68 | humidity | 70 | 720 | > th | dose dependent | sin | 2 | NA |
| 904 | 58.73 | humidity | 70 | 720 | > th | dose dependent | rect. | 6 | 9 |
| 1000 | 58.88 | humidity | 70 | 270 | > th | dose dependent | rect. | 2 | 21 |