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Os03g0173700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0172) R2 : 0.807
β1 : 1.16 (0.0631) R2dD : 0.15 R2D : 0.0291
β2 : 1.59 (0.043) R2dC : 0.577 R2C : 0.497
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.727 (0.0368) R2dN8 : 0.222 R2N8 : 0.0943
σ : 0.324
deviance : 47.89
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_____
C
peak time of C : 15.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.25 0.302 11.1 1.02 1.6 -0.312 -0.614 -1.97 0.757 15.2 0.3187 4424 -- --
42.57 0.304 11.1 1.03 1.6 -0.526 -0.594 -- 0.756 15.2 0.963 2216 -- --
42.44 0.303 11.1 0.996 1.6 -0.303 -- -1.95 0.752 15.3 0.6208 4425 -- --
43.75 0.308 11.1 1.01 1.6 -0.541 -- -- 0.755 15.2 0.7047 2220 -- --
184.25 0.632 11.1 0.899 -- -0.293 -- -1.68 0.693 -- 0.6676 7162 -- --
46.3 0.319 11.1 1.18 1.59 -- -0.701 -- 0.731 15.2 -- -- -- --
47.89 0.324 11.1 1.16 1.59 -- -- -- 0.727 15.2 -- -- -- --
187.29 0.637 11.1 0.971 -- -0.545 -- -- 0.716 -- 1.584 1736 -- --
67.26 0.382 11.1 -- 1.58 -0.966 -- -- 0.691 15.2 7.291 2443 -- --
190.68 0.645 11.1 1.1 -- -- -- -- 0.685 -- -- -- -- --
83.65 0.428 11.1 -- 1.56 -- -- -- 0.597 15.2 -- -- -- --
208.98 0.673 11.1 -- -- -0.821 -- -- 0.658 -- 5.606e-06 2775 -- --
222.44 0.696 11.1 -- -- -- -- -- 0.563 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.60 radiation 1.0 4320 < th dose independent rect. 18 11
2 37.72 radiation 1.0 4320 < th dose independent rect. 18 9
4 37.75 radiation 1.0 4320 < th dose independent rect. 18 7
6 37.77 radiation 1.0 4320 < th dose independent rect. 18 2
9 37.80 wind 3.0 43200 < th dose dependent rect. 24 13
14 37.87 wind 3.0 43200 < th dose dependent rect. 4 9
16 37.91 wind 3.0 43200 < th dose dependent rect. 3 11
21 37.97 humidity 80.0 43200 > th dose independent rect. 5 1
24 38.00 wind 1.0 43200 < th dose dependent rect. 5 1
28 38.04 radiation 1.0 4320 > th dose independent rect. 18 11
31 38.05 wind 3.0 43200 < th dose dependent sin 5 NA
36 38.08 wind 1.0 43200 < th dose independent rect. 5 1
46 38.14 radiation 1.0 4320 > th dose independent rect. 18 1
61 38.20 wind 3.0 43200 < th dose dependent rect. 24 7
70 38.24 wind 3.0 43200 < th dose independent rect. 2 14
77 38.28 humidity 80.0 43200 < th dose dependent rect. 1 2
88 38.31 wind 1.0 43200 > th dose independent rect. 8 2
96 38.33 wind 3.0 43200 > th dose independent rect. 2 15
119 38.38 humidity 80.0 43200 < th dose independent rect. 3 1
136 38.41 humidity 80.0 43200 < th dose independent rect. 23 1
178 38.50 humidity 80.0 43200 < th dose independent rect. 23 8
183 38.51 wind 3.0 43200 < th dose independent sin 3 NA
199 38.55 wind 3.0 43200 > th dose independent rect. 5 2
227 38.61 humidity 80.0 43200 > th dose independent rect. 24 7
245 38.63 humidity 80.0 14400 > th dose independent rect. 10 1
254 38.64 wind 3.0 43200 > th dose independent sin 3 NA
255 38.64 humidity 80.0 43200 > th dose independent rect. 24 1
265 38.66 wind 1.0 43200 < th dose independent rect. 8 3
282 38.68 wind 3.0 43200 < th dose independent rect. 2 5
330 38.75 humidity 90.0 14400 > th dose independent rect. 19 6
346 38.77 wind 1.0 43200 > th dose dependent rect. 5 2
371 38.83 wind 1.0 43200 < th dose dependent rect. 8 3
374 38.84 precipitation 0.1 14400 > th dose independent rect. 16 1
375 38.84 precipitation 0.1 14400 < th dose independent rect. 16 1
379 38.84 precipitation 0.1 14400 < th dose dependent rect. 16 1
399 38.86 wind 3.0 43200 > th dose independent rect. 2 5
419 38.88 humidity 90.0 14400 < th dose independent rect. 19 14
435 38.90 precipitation 0.1 14400 > th dose dependent rect. 16 1
444 38.91 humidity 90.0 14400 > th dose independent rect. 19 13
449 38.92 humidity 90.0 14400 < th dose independent rect. 19 7
452 38.92 wind 9.0 43200 < th dose dependent rect. 6 1
458 38.93 wind 3.0 43200 > th dose independent rect. 12 1
513 38.97 wind 1.0 43200 > th dose dependent rect. 24 17
609 39.06 humidity 90.0 14400 < th dose independent rect. 20 3
616 39.06 wind 3.0 43200 < th dose dependent rect. 11 2
623 39.07 wind 1.0 43200 < th dose independent rect. 1 2
671 39.11 humidity 80.0 14400 < th dose independent rect. 10 1
687 39.12 humidity 80.0 14400 > th dose independent rect. 13 6
691 39.12 humidity 80.0 14400 > th dose independent rect. 9 10
720 39.14 precipitation 0.1 14400 > th dose independent rect. 13 11
721 39.14 precipitation 0.1 14400 > th dose independent rect. 13 16
722 39.14 precipitation 0.1 14400 > th dose independent rect. 11 18
729 39.15 precipitation 0.1 14400 > th dose independent sin 16 NA
732 39.15 precipitation 0.1 14400 < th dose independent rect. 13 11
735 39.15 precipitation 0.1 14400 < th dose independent rect. 13 16
736 39.15 precipitation 0.1 14400 < th dose independent rect. 11 18
738 39.15 precipitation 0.1 14400 < th dose dependent rect. 13 11
739 39.15 precipitation 0.1 14400 < th dose dependent rect. 13 16
740 39.15 precipitation 0.1 14400 < th dose dependent rect. 11 18
755 39.17 humidity 90.0 14400 > th dose independent sin 12 NA
757 39.17 precipitation 0.1 14400 < th dose independent sin 16 NA
759 39.17 precipitation 0.1 14400 > th dose independent rect. 16 8
766 39.17 precipitation 0.1 14400 < th dose dependent sin 16 NA
779 39.18 precipitation 0.1 14400 > th dose independent rect. 16 13
781 39.18 precipitation 0.1 14400 > th dose independent rect. 13 14
797 39.19 precipitation 0.1 14400 < th dose independent rect. 16 8
808 39.19 precipitation 0.1 14400 < th dose dependent rect. 16 8
815 39.20 humidity 80.0 14400 < th dose independent rect. 13 5
820 39.20 precipitation 0.1 14400 > th dose independent rect. 11 13
821 39.20 precipitation 0.1 14400 < th dose independent rect. 13 14
822 39.20 precipitation 0.1 14400 < th dose independent rect. 15 14
833 39.20 precipitation 0.1 14400 < th dose dependent rect. 13 14
834 39.20 precipitation 0.1 14400 < th dose dependent rect. 15 14
839 39.20 precipitation 0.1 14400 > th dose dependent rect. 13 16
859 39.21 wind 3.0 43200 < th dose independent rect. 15 22
900 39.23 wind 1.0 43200 > th dose independent rect. 24 2
934 39.24 wind 1.0 43200 > th dose dependent sin 3 NA
942 39.24 precipitation 0.1 14400 > th dose dependent rect. 11 18
972 39.26 humidity 90.0 14400 < th dose independent sin 11 NA