Os03g0170400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).
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Os03g0170400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.68 | 0.247 | 12 | 0.441 | 1.12 | 1.35 | -0.454 | 1.34 | 0.195 | 17.4 | 20.62 | 270 | -- | -- |
| 28.08 | 0.247 | 11.9 | 0.476 | 1.12 | 0.823 | -0.578 | -- | 0.206 | 17.5 | 21.45 | 318 | -- | -- |
| 28.05 | 0.247 | 12 | 0.426 | 1.13 | 1.34 | -- | 1.47 | 0.192 | 17.4 | 20.9 | 270 | -- | -- |
| 28.9 | 0.25 | 11.9 | 0.472 | 1.11 | 0.833 | -- | -- | 0.205 | 17.4 | 21.4 | 280 | -- | -- |
| 87.28 | 0.435 | 11.9 | 0.449 | -- | 0.641 | -- | 0.0625 | 0.242 | -- | 26.91 | 1252 | -- | -- |
| 33.53 | 0.271 | 12 | 0.299 | 1.07 | -- | -0.571 | -- | 0.13 | 17.5 | -- | -- | -- | -- |
| 34.34 | 0.274 | 12 | 0.301 | 1.06 | -- | -- | -- | 0.127 | 17.5 | -- | -- | -- | -- |
| 87.28 | 0.435 | 11.9 | 0.46 | -- | 0.642 | -- | -- | 0.246 | -- | 26.8 | 1250 | -- | -- |
| 33.98 | 0.272 | 12 | -- | 1.09 | 0.553 | -- | -- | 0.133 | 17.5 | 21.5 | 262 | -- | -- |
| 93.26 | 0.451 | 11.9 | 0.266 | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
| 36.73 | 0.283 | 12 | -- | 1.06 | -- | -- | -- | 0.0935 | 17.5 | -- | -- | -- | -- |
| 92.05 | 0.447 | 11.9 | -- | -- | 0.423 | -- | -- | 0.153 | -- | 26.9 | 1240 | -- | -- |
| 95.13 | 0.455 | 11.9 | -- | -- | -- | -- | -- | 0.0715 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.61 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 23 |
| 2 | 27.88 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 22 | 13 |
| 4 | 27.92 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 9 | 27.94 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 28 | 28.03 | temperature | 20.0 | 270 | < th | dose independent | rect. | 3 | 22 |
| 45 | 28.10 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 4 | 22 |
| 50 | 28.12 | temperature | 20.0 | 270 | < th | dose dependent | no | NA | NA |
| 65 | 28.14 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 97 | 28.22 | temperature | 20.0 | 270 | < th | dose independent | rect. | 16 | 18 |
| 130 | 28.29 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 23 |
| 133 | 28.30 | temperature | 20.0 | 270 | < th | dose dependent | sin | 9 | NA |
| 149 | 28.32 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 155 | 28.34 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 11 |
| 156 | 28.34 | temperature | 20.0 | 270 | < th | dose independent | rect. | 11 | 23 |
| 163 | 28.35 | temperature | 20.0 | 270 | > th | dose independent | rect. | 15 | 23 |
| 165 | 28.35 | temperature | 20.0 | 270 | < th | dose independent | rect. | 18 | 23 |
| 179 | 28.37 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 193 | 28.38 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 217 | 28.40 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 219 | 28.41 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 247 | 28.45 | temperature | 20.0 | 720 | > th | dose independent | rect. | 9 | 20 |
| 255 | 28.46 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 23 |
| 282 | 28.50 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 21 |
| 339 | 28.56 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 5 |
| 341 | 28.56 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 342 | 28.56 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 355 | 28.57 | temperature | 25.0 | 30 | < th | dose dependent | no | NA | NA |
| 362 | 28.57 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 365 | 28.57 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 380 | 28.58 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 388 | 28.59 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 394 | 28.60 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 476 | 28.68 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 20 | 4 |
| 488 | 28.69 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 489 | 28.69 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 514 | 28.72 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 23 |
| 525 | 28.73 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 537 | 28.74 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 22 |
| 579 | 28.80 | temperature | 20.0 | 720 | < th | dose independent | sin | 16 | NA |
| 604 | 28.83 | temperature | 20.0 | 720 | < th | dose independent | rect. | 9 | 16 |
| 609 | 28.83 | temperature | 10.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 640 | 28.87 | temperature | 20.0 | 720 | < th | dose independent | rect. | 11 | 16 |
| 642 | 28.87 | temperature | 20.0 | 720 | > th | dose independent | rect. | 17 | 19 |
| 707 | 28.92 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 708 | 28.92 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 709 | 28.92 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 738 | 28.94 | temperature | 20.0 | 270 | < th | dose independent | sin | 10 | NA |
| 772 | 28.96 | temperature | 20.0 | 270 | > th | dose independent | sin | 9 | NA |
| 796 | 28.97 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 842 | 29.00 | temperature | 20.0 | 720 | > th | dose independent | sin | 14 | NA |
| 843 | 29.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 844 | 29.00 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 890 | 29.02 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 927 | 29.03 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 20 |
| 941 | 29.04 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 19 |