Os03g0170300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 3-dehydroquinate synthase family protein.
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Os03g0170300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 3-dehydroquinate synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.9 | 0.322 | 9.33 | -1.08 | 0.395 | 1.08 | 0.531 | -0.509 | -0.428 | 19.3 | 20.9 | 258 | -- | -- |
| 47.09 | 0.32 | 9.32 | -0.987 | 0.401 | 1.04 | 0.469 | -- | -0.399 | 19.3 | 20.91 | 258 | -- | -- |
| 47.57 | 0.321 | 9.32 | -1.06 | 0.387 | 1.08 | -- | -0.262 | -0.419 | 19.5 | 20.93 | 254 | -- | -- |
| 47.61 | 0.321 | 9.32 | -1.01 | 0.389 | 1.08 | -- | -- | -0.409 | 19.6 | 21.01 | 254 | -- | -- |
| 52.54 | 0.338 | 9.33 | -1.18 | -- | 1.34 | -- | -0.631 | -0.492 | -- | 21.2 | 367 | -- | -- |
| 66.27 | 0.382 | 9.28 | -0.754 | 0.759 | -- | 0.857 | -- | -0.223 | 18 | -- | -- | -- | -- |
| 68.07 | 0.386 | 9.28 | -0.762 | 0.763 | -- | -- | -- | -0.22 | 18.1 | -- | -- | -- | -- |
| 52.8 | 0.338 | 9.31 | -1.06 | -- | 1.31 | -- | -- | -0.449 | -- | 21.35 | 352 | -- | -- |
| 72.16 | 0.396 | 9.28 | -- | 0.486 | 0.771 | -- | -- | -0.242 | 18.8 | 21.8 | 258 | -- | -- |
| 98.28 | 0.463 | 9.27 | -0.784 | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
| 83.38 | 0.427 | 9.26 | -- | 0.775 | -- | -- | -- | -0.135 | 18 | -- | -- | -- | -- |
| 79.28 | 0.415 | 9.27 | -- | -- | 1.09 | -- | -- | -0.238 | -- | 24.2 | 326 | -- | -- |
| 114.49 | 0.499 | 9.25 | -- | -- | -- | -- | -- | -0.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.80 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 3 | 42.82 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 8 | 42.83 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 9 | 42.83 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 30 | 43.10 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 17 |
| 32 | 43.20 | radiation | 10 | 43200 | < th | dose independent | sin | 13 | NA |
| 38 | 43.32 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 19 |
| 56 | 43.55 | radiation | 30 | 43200 | < th | dose independent | sin | 12 | NA |
| 59 | 43.59 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 65 | 43.63 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 77 | 43.64 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 79 | 43.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 102 | 43.76 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 105 | 43.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 109 | 43.77 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 111 | 43.79 | radiation | 20 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 159 | 43.84 | radiation | 30 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 174 | 43.91 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 180 | 43.92 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 183 | 43.94 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 185 | 43.95 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 187 | 43.95 | radiation | 10 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 198 | 43.96 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 211 | 43.97 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |
| 212 | 43.97 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 270 | 43.97 | radiation | 10 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 300 | 44.01 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 312 | 44.02 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |
| 313 | 44.02 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 449 | 44.05 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 456 | 44.06 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 462 | 44.07 | radiation | 30 | 43200 | < th | dose independent | sin | 3 | NA |
| 514 | 44.11 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 516 | 44.12 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 517 | 44.12 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 525 | 44.13 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 537 | 44.13 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 538 | 44.13 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 542 | 44.13 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 577 | 44.17 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 594 | 44.18 | radiation | 40 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 602 | 44.19 | radiation | 40 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 617 | 44.20 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 653 | 44.23 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 659 | 44.24 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 667 | 44.25 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 779 | 44.29 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 791 | 44.29 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 11 |
| 954 | 44.30 | radiation | 40 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 978 | 44.32 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 987 | 44.33 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 995 | 44.33 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 999 | 44.33 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 15 | 2 |