Os03g0170200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MADS30.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0170200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to MADS30.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.89 | 0.225 | 11.4 | -0.568 | 0.416 | -0.521 | -0.118 | -0.663 | 0.11 | 21.9 | 24.2 | 44 | -- | -- |
| 23.4 | 0.227 | 11.4 | -0.659 | 0.419 | -0.445 | -0.265 | -- | 0.0739 | 22.1 | 25.7 | 30 | -- | -- |
| 22.94 | 0.223 | 11.4 | -0.554 | 0.417 | -0.528 | -- | -0.731 | 0.112 | 21.9 | 24.2 | 43 | -- | -- |
| 23.64 | 0.226 | 11.4 | -0.658 | 0.415 | -0.458 | -- | -- | 0.0701 | 22.2 | 25.9 | 36 | -- | -- |
| 28.69 | 0.249 | 11.4 | -0.508 | -- | -0.589 | -- | -0.981 | 0.104 | -- | 27.68 | 642 | -- | -- |
| 26.42 | 0.241 | 11.4 | -0.556 | 0.366 | -- | -0.303 | -- | 0.169 | 21.2 | -- | -- | -- | -- |
| 26.74 | 0.242 | 11.4 | -0.545 | 0.366 | -- | -- | -- | 0.169 | 21.3 | -- | -- | -- | -- |
| 28.87 | 0.25 | 11.4 | -0.7 | -- | -0.568 | -- | -- | 0.0558 | -- | 28.66 | 660 | -- | -- |
| 33.85 | 0.272 | 11.4 | -- | 0.388 | -0.211 | -- | -- | 0.19 | 21.6 | 25.9 | 36 | -- | -- |
| 34.54 | 0.275 | 11.4 | -0.544 | -- | -- | -- | -- | 0.167 | -- | -- | -- | -- | -- |
| 34.58 | 0.275 | 11.4 | -- | 0.366 | -- | -- | -- | 0.23 | 21.2 | -- | -- | -- | -- |
| 40.49 | 0.296 | 11.4 | -- | -- | -0.313 | -- | -- | 0.173 | -- | 29.2 | 633 | -- | -- |
| 42.35 | 0.304 | 11.4 | -- | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.52 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 20 |
| 11 | 22.61 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 43 | 22.84 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 19 |
| 44 | 22.84 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 47 | 22.86 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 16 |
| 49 | 22.86 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 17 |
| 51 | 22.86 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 22 |
| 57 | 22.89 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 14 |
| 65 | 22.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 17 |
| 91 | 22.94 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 17 |
| 104 | 22.95 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 106 | 22.95 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 107 | 22.96 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 109 | 22.96 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 15 |
| 114 | 22.96 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 127 | 22.97 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 21 |
| 134 | 22.97 | temperature | 25 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 141 | 22.98 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 142 | 22.98 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 146 | 22.99 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 15 |
| 156 | 23.00 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 183 | 23.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 2 |
| 218 | 23.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 370 | 23.20 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 18 |
| 398 | 23.22 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 475 | 23.29 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 10 |
| 499 | 23.31 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 16 |
| 534 | 23.33 | temperature | 20 | 10 | > th | dose dependent | sin | 10 | NA |
| 604 | 23.37 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 13 |
| 658 | 23.40 | temperature | 25 | 30 | < th | dose dependent | sin | 12 | NA |
| 659 | 23.40 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 785 | 23.47 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 791 | 23.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 816 | 23.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 858 | 23.51 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 859 | 23.51 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 23 |
| 907 | 23.54 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 908 | 23.54 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 919 | 23.54 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 21 |
| 936 | 23.55 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 23 |
| 938 | 23.55 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 23 |
| 977 | 23.57 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 983 | 23.57 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 21 |
| 992 | 23.57 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 9 |