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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0170100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.2 (0.0508) R2 : 0.425
β1 : 1.43 (0.184) R2dD : 0.079 R2D : 0.0516
β2 : 1.62 (0.13) R2dC : 0.199 R2C : 0.221
β3 : 1.61 (0.158) R2dE : 0.159 R2E : 0.146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.457 (0.114) R2dN8 : 0.0285 R2N8 : -0.0395
σ : 0.933
deviance : 401.72
__
_____
C
peak time of C : 18.9
E
wheather : radiation
threshold : 19.71
memory length : 1294
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.8
open length of G : 2.55

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
387.11 0.924 4.2 1.48 1.61 1.64 2.41 -0.329 0.444 19.2 19.09 1295 10.8 2.46
387.34 0.917 4.2 1.47 1.61 1.64 2.37 -- 0.439 19.2 19.09 1294 10.8 2.5
401.84 0.934 4.2 1.44 1.61 1.6 -- -0.195 0.453 19 19.71 1293 10.8 2.53
401.72 0.933 4.2 1.43 1.62 1.61 -- -- 0.457 18.9 19.71 1294 10.8 2.55
535.76 1.08 4.21 1.4 -- 1.89 -- 0.169 0.42 -- 19.97 1255 10.8 2.6
480.47 1.03 4.3 1.28 1.75 -- 2.33 -- 0.0216 19.5 -- -- -- --
495.36 1.04 4.3 1.23 1.76 -- -- -- 0.0267 19.4 -- -- -- --
535.71 1.08 4.21 1.4 -- 1.88 -- -- 0.408 -- 19.98 1256 10.8 2.61
456.63 0.995 4.2 -- 1.63 1.61 -- -- 0.455 19 19.71 1294 10.8 2.58
659.36 1.2 4.26 1.2 -- -- -- -- -0.00214 -- -- -- -- --
534.92 1.08 4.33 -- 1.74 -- -- -- -0.11 19.4 -- -- -- --
585.57 1.13 4.19 -- -- 1.79 -- -- 0.32 -- 19.98 1229 10.8 2.68
697.11 1.23 4.29 -- -- -- -- -- -0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 409.31 radiation 20.0 1440 < th dose independent rect. 11 2
2 412.29 wind 9.0 4320 < th dose independent rect. 17 5
4 413.38 wind 9.0 4320 > th dose independent rect. 17 5
7 414.19 wind 7.0 4320 > th dose dependent rect. 17 4
13 414.90 wind 9.0 4320 > th dose dependent rect. 15 6
15 415.31 wind 9.0 4320 > th dose dependent rect. 15 14
22 415.81 wind 9.0 4320 < th dose independent rect. 17 9
24 415.89 wind 9.0 4320 < th dose independent rect. 17 11
32 416.13 wind 9.0 4320 > th dose independent rect. 17 11
33 416.13 wind 9.0 4320 < th dose independent rect. 16 13
41 416.33 wind 9.0 4320 < th dose independent rect. 16 17
43 416.54 wind 9.0 4320 < th dose independent rect. 16 15
46 416.58 wind 9.0 4320 > th dose independent rect. 17 9
53 416.81 radiation 10.0 4320 < th dose dependent rect. 22 7
78 417.91 humidity 80.0 14400 > th dose dependent rect. 13 1
93 418.19 humidity 90.0 14400 < th dose independent rect. 13 1
124 418.89 wind 9.0 4320 < th dose independent rect. 17 1
133 419.12 humidity 70.0 1440 < th dose independent rect. 11 3
135 419.14 humidity 70.0 1440 > th dose independent rect. 11 3
139 419.21 wind 9.0 4320 > th dose independent rect. 17 1
146 419.63 wind 9.0 4320 > th dose dependent rect. 17 1
160 420.36 wind 9.0 14400 > th dose dependent rect. 6 5
161 420.38 wind 9.0 4320 > th dose dependent sin 13 NA
183 421.15 humidity 80.0 14400 > th dose independent rect. 15 1
190 421.29 wind 9.0 4320 > th dose independent sin 13 NA
191 421.43 humidity 90.0 14400 > th dose independent rect. 13 1
197 421.80 wind 9.0 4320 < th dose independent sin 13 NA
204 422.18 radiation 20.0 1440 < th dose dependent rect. 11 1
218 422.69 wind 9.0 14400 > th dose dependent rect. 9 2
242 423.23 wind 9.0 43200 < th dose dependent rect. 1 7
243 423.24 wind 5.0 43200 < th dose dependent rect. 1 7
252 423.42 humidity 90.0 14400 > th dose independent rect. 15 13
261 423.53 wind 9.0 43200 < th dose dependent rect. 3 5
263 423.55 wind 1.0 43200 > th dose dependent rect. 24 8
264 423.56 wind 3.0 43200 < th dose independent rect. 7 1
267 423.61 humidity 90.0 14400 > th dose independent rect. 13 15
269 423.63 wind 5.0 43200 < th dose dependent rect. 4 2
280 423.76 precipitation 0.1 14400 > th dose independent rect. 13 1
286 423.81 wind 3.0 43200 > th dose independent rect. 7 1
289 423.86 precipitation 0.1 14400 < th dose independent rect. 13 1
291 423.86 precipitation 0.1 14400 < th dose dependent rect. 13 1
294 423.88 wind 1.0 43200 > th dose dependent rect. 3 5
312 424.05 precipitation 0.1 14400 < th dose independent rect. 9 7
314 424.05 precipitation 0.1 14400 < th dose dependent rect. 9 7
327 424.17 humidity 90.0 14400 > th dose independent sin 14 NA
341 424.30 wind 3.0 43200 > th dose independent rect. 5 4
353 424.39 humidity 90.0 14400 > th dose independent rect. 17 17
358 424.41 wind 3.0 43200 < th dose independent rect. 5 4
372 424.49 wind 1.0 43200 > th dose dependent rect. 4 2
381 424.54 radiation 20.0 1440 > th dose independent rect. 11 2
419 424.78 wind 1.0 43200 > th dose dependent rect. 7 1
427 424.81 humidity 90.0 14400 > th dose independent rect. 19 6
470 425.04 radiation 20.0 1440 < th dose independent rect. 11 20
477 425.09 wind 3.0 43200 > th dose independent rect. 5 1
486 425.15 temperature 20.0 270 > th dose independent rect. 11 21
523 425.40 humidity 90.0 14400 > th dose independent rect. 19 19
526 425.41 humidity 90.0 14400 > th dose independent rect. 9 20
527 425.43 radiation 20.0 1440 < th dose independent rect. 11 11
588 425.73 precipitation 0.1 14400 > th dose independent rect. 9 7
590 425.73 radiation 20.0 1440 < th dose dependent rect. 8 6
595 425.76 humidity 90.0 720 > th dose dependent rect. 20 3
600 425.79 precipitation 0.1 14400 < th dose independent rect. 7 9
602 425.79 precipitation 0.1 14400 < th dose dependent rect. 7 9
619 425.93 humidity 90.0 14400 > th dose independent rect. 9 23
620 425.94 wind 3.0 43200 < th dose independent rect. 1 8
630 425.96 wind 3.0 43200 > th dose independent rect. 1 8
635 425.98 wind 9.0 43200 < th dose dependent rect. 7 1
640 426.01 humidity 90.0 14400 > th dose dependent rect. 24 21
644 426.04 wind 3.0 43200 < th dose independent rect. 5 1
671 426.19 humidity 90.0 14400 > th dose dependent rect. 12 22
674 426.20 humidity 90.0 720 > th dose dependent rect. 19 6
695 426.31 humidity 90.0 14400 > th dose independent no NA NA
719 426.39 humidity 90.0 14400 > th dose dependent rect. 12 16
731 426.44 precipitation 0.1 14400 > th dose independent rect. 7 9
736 426.46 humidity 90.0 14400 > th dose independent rect. 24 23
749 426.51 humidity 90.0 14400 > th dose dependent rect. 7 21
812 426.83 humidity 90.0 14400 > th dose dependent rect. 15 23
813 426.84 humidity 90.0 14400 > th dose dependent no NA NA
821 426.86 humidity 90.0 14400 > th dose independent rect. 2 23
844 426.94 humidity 90.0 14400 > th dose dependent rect. 19 23
846 426.95 humidity 90.0 14400 > th dose dependent rect. 3 23
886 427.14 humidity 90.0 14400 > th dose independent rect. 22 1
935 427.32 humidity 90.0 720 > th dose dependent rect. 20 1