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Os03g0169800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HNH nuclease domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0194) R2 : 0.474
β1 : -0.797 (0.0711) R2dD : 0.151 R2D : 0.0746
β2 : 0.774 (0.0506) R2dC : 0.272 R2C : 0.258
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.347 (0.0415) R2dN8 : 0.108 R2N8 : 0.0461
σ : 0.365
deviance : 60.87
__
_____
C
peak time of C : 18.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
53.67 0.344 11.6 -0.781 0.937 0.654 0.205 0.0779 -0.322 15.6 16.85 15 -- --
53.67 0.341 11.6 -0.782 0.948 0.664 0.154 -- -0.316 15.6 16.96 16 -- --
53.74 0.341 11.6 -0.781 0.942 0.656 -- -0.0144 -0.316 15.6 16.99 16 -- --
53.74 0.341 11.6 -0.78 0.941 0.655 -- -- -0.316 15.6 16.99 16 -- --
86.63 0.436 11.6 -0.823 -- 0.235 -- 0.0493 -0.359 -- 9.209 10 -- --
60.81 0.366 11.6 -0.795 0.773 -- 0.152 -- -0.347 18.7 -- -- -- --
60.87 0.365 11.6 -0.797 0.774 -- -- -- -0.347 18.7 -- -- -- --
86.65 0.435 11.6 -0.824 -- 0.234 -- -- -0.36 -- 9.209 10 -- --
69.71 0.389 11.6 -- 0.981 0.698 -- -- -0.229 15.5 18.35 16 -- --
92.15 0.449 11.6 -0.815 -- -- -- -- -0.362 -- -- -- -- --
77.63 0.412 11.6 -- 0.784 -- -- -- -0.258 18.6 -- -- -- --
104.17 0.477 11.6 -- -- 0.25 -- -- -0.272 -- 16.37 6 -- --
109.68 0.489 11.6 -- -- -- -- -- -0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.93 temperature 25.0 270 > th dose independent rect. 23 20
2 52.02 temperature 20.0 720 > th dose dependent rect. 8 1
3 52.18 temperature 20.0 270 > th dose dependent rect. 23 20
5 52.31 temperature 10.0 270 > th dose dependent rect. 22 21
12 52.42 temperature 10.0 30 > th dose dependent rect. 2 18
16 52.56 radiation 20.0 30 < th dose dependent rect. 21 23
17 52.59 radiation 20.0 10 < th dose dependent rect. 2 18
26 52.76 radiation 10.0 30 < th dose independent rect. 7 13
33 52.87 radiation 20.0 10 < th dose dependent rect. 24 20
38 52.90 temperature 10.0 270 > th dose dependent rect. 7 12
40 52.91 temperature 20.0 30 > th dose dependent rect. 17 3
58 53.06 radiation 10.0 30 < th dose independent rect. 2 18
63 53.09 radiation 10.0 10 < th dose dependent rect. 4 16
68 53.12 temperature 20.0 270 > th dose dependent rect. 13 22
70 53.14 radiation 20.0 10 < th dose dependent rect. 8 12
78 53.22 temperature 15.0 90 > th dose independent rect. 19 22
80 53.23 temperature 20.0 270 > th dose dependent rect. 7 12
94 53.31 temperature 30.0 30 < th dose independent rect. 20 21
100 53.32 radiation 10.0 10 < th dose dependent sin 1 NA
120 53.40 radiation 10.0 30 < th dose independent rect. 23 21
124 53.41 temperature 20.0 270 > th dose dependent rect. 15 3
172 53.59 temperature 25.0 1440 > th dose independent rect. 18 8
201 53.68 radiation 20.0 10 < th dose dependent rect. 16 22
204 53.70 temperature 25.0 1440 < th dose independent rect. 18 9
220 53.74 temperature 25.0 270 < th dose independent rect. 6 20
252 53.82 radiation 20.0 10 < th dose dependent rect. 7 23
260 53.86 temperature 15.0 270 > th dose independent rect. 17 22
263 53.86 radiation 20.0 10 < th dose dependent rect. 13 23
269 53.89 temperature 15.0 10 > th dose independent rect. 20 21
270 53.89 temperature 30.0 270 < th dose dependent rect. 6 17
285 53.92 temperature 15.0 10 > th dose independent rect. 20 6
288 53.92 radiation 20.0 10 < th dose dependent no NA NA
289 53.93 temperature 25.0 30 > th dose independent rect. 17 3
306 53.97 radiation 10.0 30 < th dose independent rect. 21 23
307 53.97 radiation 30.0 30 < th dose dependent rect. 12 8
317 53.98 radiation 20.0 10 < th dose dependent rect. 11 23
341 54.03 radiation 10.0 30 < th dose independent rect. 13 7
378 54.08 humidity 90.0 90 < th dose dependent rect. 17 2
425 54.17 humidity 90.0 90 < th dose independent rect. 17 2
443 54.19 temperature 20.0 270 > th dose dependent rect. 6 23
465 54.24 temperature 25.0 270 > th dose independent rect. 13 22
481 54.25 temperature 30.0 270 < th dose dependent rect. 5 20
487 54.26 wind 9.0 43200 > th dose dependent rect. 18 14
497 54.27 radiation 40.0 720 > th dose dependent rect. 12 23
500 54.28 temperature 25.0 720 > th dose independent rect. 8 1
508 54.29 wind 1.0 90 > th dose independent rect. 3 16
517 54.31 humidity 50.0 90 > th dose independent rect. 19 22
518 54.31 temperature 20.0 270 > th dose dependent no NA NA
521 54.31 radiation 20.0 10 < th dose dependent rect. 9 23
523 54.32 temperature 25.0 270 > th dose independent rect. 7 12
542 54.35 precipitation 0.1 90 < th dose independent rect. 17 2
544 54.35 precipitation 0.1 90 < th dose dependent rect. 17 2
549 54.36 temperature 25.0 720 > th dose independent rect. 22 13
552 54.37 wind 5.0 90 < th dose independent rect. 15 4
567 54.38 wind 5.0 90 < th dose independent rect. 23 21
575 54.39 temperature 25.0 720 > th dose independent rect. 17 18
578 54.40 radiation 30.0 720 < th dose independent sin 11 NA
581 54.40 wind 5.0 90 < th dose independent rect. 2 17
582 54.40 atmosphere 1015.0 90 < th dose dependent rect. 17 2
606 54.42 temperature 20.0 270 > th dose dependent rect. 4 23
608 54.43 radiation 30.0 720 > th dose dependent sin 12 NA
612 54.44 wind 1.0 90 > th dose independent rect. 17 2
614 54.44 radiation 1.0 270 > th dose independent rect. 15 14
620 54.45 radiation 1.0 270 > th dose independent rect. 15 4
633 54.45 radiation 20.0 43200 < th dose independent rect. 17 15
644 54.46 temperature 25.0 270 > th dose independent rect. 15 3
677 54.49 radiation 10.0 43200 > th dose independent rect. 10 1
694 54.51 temperature 25.0 1440 > th dose independent sin 13 NA
695 54.51 temperature 10.0 90 > th dose independent rect. 17 2
697 54.51 atmosphere 1010.0 90 < th dose independent rect. 17 2
699 54.51 radiation 20.0 90 < th dose independent rect. 17 2
716 54.53 radiation 20.0 43200 < th dose independent rect. 5 3
724 54.53 radiation 10.0 4320 < th dose dependent rect. 21 6
758 54.56 wind 9.0 90 < th dose independent rect. 17 2
760 54.56 humidity 90.0 30 < th dose independent rect. 20 21
765 54.56 temperature 20.0 90 > th dose dependent rect. 16 13
773 54.57 radiation 1.0 90 > th dose independent rect. 5 11
778 54.57 radiation 20.0 43200 > th dose dependent rect. 6 2
780 54.57 humidity 90.0 270 < th dose dependent rect. 15 3
797 54.57 wind 9.0 43200 > th dose dependent rect. 17 16
808 54.58 radiation 10.0 30 < th dose independent rect. 7 23
811 54.58 temperature 25.0 720 > th dose dependent rect. 22 11
849 54.61 atmosphere 1000.0 10 > th dose independent rect. 20 6
856 54.61 wind 9.0 90 < th dose dependent rect. 17 2
867 54.62 precipitation 0.1 30 < th dose independent rect. 2 18
870 54.62 precipitation 0.1 30 < th dose dependent rect. 2 18
876 54.63 atmosphere 995.0 90 > th dose independent rect. 17 2
878 54.63 temperature 30.0 270 < th dose independent rect. 10 14
879 54.63 wind 9.0 90 < th dose independent rect. 19 22
890 54.63 atmosphere 995.0 10 > th dose dependent rect. 20 21
892 54.63 temperature 20.0 270 > th dose dependent rect. 2 23
898 54.64 temperature 20.0 270 > th dose dependent sin 21 NA
907 54.65 temperature 25.0 1440 < th dose independent sin 13 NA
924 54.66 wind 1.0 30 > th dose independent rect. 20 6
938 54.67 radiation 40.0 43200 > th dose dependent rect. 10 1
948 54.68 radiation 10.0 10 < th dose independent rect. 17 3
956 54.68 radiation 40.0 90 < th dose dependent rect. 17 2
970 54.69 atmosphere 995.0 90 > th dose independent rect. 19 22